Sequence
atgc intronic sequence ATGC exonic sequence...tacacttgggtgcattgtcttttgtttaaaattccatgcagtttgtatacttcagttcacaaggattcaagattataaattgtcacccgtttccttttagGTCTGTGGGCAAAACACAGATGAATGAGCAATCATCCAGAAGTCATTTTGTGTTCACTCTGCGGATATCTGGTGTTAATGAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv19s0014g05070.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GRMZM2G114861_T01 (Zea mays), 3'ss of exon 12
tacacttgggtgcattgtcttttgtttaaaattcca-tgcagtttgtatacttcagttcacaaggattca--agattataaattgtcacccgtttccttttagGTCTGTGGGCAAAACACAGATGAATGAGCAATCATCCAGAAGTCATTTTGTGTTCACTCTGCGGATATCTGGTGTTAATGAG
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tagatctga---cattgtatctaaaatggctttctaattcagcatatatctctgtgactacatatctctattgggtctgataatgttatctgcatttcaatagGTCTGTGGGTAAGACTCAGATGAATGAACAGTCGTCCAGAAGTCATTTTGTATTCACATTAAAGATATCTGGATCTAACGAG
upper sequence: Vv19s0014g05070.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA06G41600.1 (Glycine max), 3'ss of exon 12
-tacacttgggtgcattgtcttttgtttaaaattccatgcagtttgtatac-ttcagttcacaaggattcaagattataaattgtcacccgtttccttttagGTCTGTGGGCAAAACACAGATGAATGAGCAATCATCCAGAAGTCATTTTGTGTTCACTCTGCGGATATCTGGTGTTAATGAG
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caaaatattgatttgttttctcttagtagccacaactctcaacctttttatgtccaactcaactttattgat--ttatttttttcttgttatctccttttagATCTGTGGGAAAAACCCAGATGAATGAACAATCATCAAGAAGTCATTTTGTATTCACTCTTCGAATATACGGTGTAAATGAG
upper sequence: Vv19s0014g05070.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA12G16580.1 (Glycine max), 3'ss of exon 13
-tacacttgggtgc-attgtcttttgtttaaaattccatgcagtttgtatacttcagttcacaaggattcaagattataaattgtcacccgtttccttttagGTCTGTGGGCAAAACACAGATGAATGAGCAATCATCCAGAAGTCATTTTGTGTTCACTCTGCGGATATCTGGTGTTAATGAG
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atggaacaaaatattgatttattttctctaagtagtcacaaaactttttatttccaacttaactgtattgat--ttctttctttctgtttacctccttttagATCTGTGGGTAAAACCCAGATGAATGAACAATCATCAAGAAGTCATTTTGTATTCACTCTTCGAATATACGGTGTAAATGAG
upper sequence: Vv19s0014g05070.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA12G34330.1 (Glycine max), 3'ss of exon 12
tacacttgggtgcattgtcttttgtttaaaattccatgcagtttgtatacttcagttcacaaggattcaa--gattataaattgtcacccgtttccttttagGTCTGTGGGCAAAACACAGATGAATGAGCAATCATCCAGAAGTCATTTTGTGTTCACTCTGCGGATATCTGGTGTTAATGAG
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--tagtgcaataaaatattttgatttatttacttctagaaggtaaaatcctttgcctttggaggttaaatttaactatatttgcttttttttttccttttagATCTGTGGGAAAAACTCAGATGAATGAACAATCTTCTAGAAGTCATTTTGTATTCACTCTTCGATTATATGGTGTAAATGAG
upper sequence: Vv19s0014g05070.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA13G36230.2 (Glycine max), 3'ss of exon 13
tacacttgggtgcattgtcttttgtttaaaattccatgcagtttgtatacttcagttcacaaggattcaa---gattataaattgtcacccgtt-tccttttagGTCTGTGGGCAAAACACAGATGAATGAGCAATCATCCAGAAGTCATTTTGTGTTCACTCTGCGGATATCTGGTGTTAATGAG
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---agtgcaataaaatat-tttgatttatttacttctagaaattataatcctttgcctttggatgttgaatttaactatatttgctttctttttgtttttttagATCTGTGGGAAAAACTCAGATGAATGAACAATCTTCTAGAAGTCATTTTGTATTCACTCTTCGAATATATGGTGTAAATGAG
upper sequence: Vv19s0014g05070.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: AT5G54670.1 (Arabidopsis thaliana), 3'ss of exon 13
----tacacttgggtgcattgtcttttgtttaaaattccatgcagtttgtatacttcagttcacaaggattcaagattataaattgtcacccgtttccttttagGTCTGTGGGCAAAACACAGATGAATGAGCAATCATCCAGAAGTCATTTTGTGTTCACTCTGCGGATATCTGGTGTTAATGAG
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gcaatatagctgaaacccgtttcaatttgactgaactaaatggccatca-agattttcgatgaatctttctgacagttgaaagttgttttctttcttcttc-agGTCTGTAGGGAAGACTCAGATGAACGAGCAATCTTCCAGAAGCCATTTTGTTTTCACGCTAAGAATCTCTGGTGTTAACGAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tatacttcagttcacaaggattcaagattataaattgtcacccgtttccttttagGTCTGTGGGCAAAACACAGATGAATGAGCAATCATCCAGAAGTCATTTTGTGTTCACTCTGCGGATATCTGGTGTTAATGAG
tcacccgtttcctttt CT-rich tract
attcaagattataaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tacacttgggtgcattgtcttttgtttaaaattccatgcagtttgtatacttcagttcacaaggattcaagattataaattgtcacccgtttccttttagGTCTGTGGGCAAAACACAGATGAATGAGCAATCATCCAGAAGTCATTTTGTGTTCACTCTGCGGATATCTGGTGTTAATGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- cacttgg
- - - - - tgcattg
- - - - - - - - - - - - - - - - -ccatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - tcacaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtcaccc