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...cccctatttccatatgcatgtgtaaagcaaagtttttaagttctctgctttcaattttcatactatttcatccctgatgtttcaattgacttatttccagGCTGAGCATGGCCCTGATAGTCAGGTTGTTCTTGTAATTGCTGGGGATGGCGTGGACCTAAGGGCTATTGAGGAGGAAATCAGCAAGCAGTGCCAAAGCC
species | Vitis vinifera |
transcript | Vv18s0166g00300.t01 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: CCGACAAACATGCTAATCCTGTTCATATTGCTGCAGATTTGTTGTCCCAG GCTGAGCATGGCCCTGATAGTCAGGTTGTTCTTGTAATTGCTGGGGATGGTEST: gi|71885572|gb|DT034627.1|DT034627
genomic: CCGACAAACATGCTAATCCTGTTCATATTGCTGCAGATTTGTTGTCCCAGgtgtgtaatc ... ttatttccagGCTGAGCATGGCCCTGATAGTCAGGTTGTTCTTGTAATTGCTGGGGATGGC
EST: CCGACAAACATGCTAATCCTGTTCATATTGCTGCAGATTTGTTGTCCCAG GCTGAGCATGGCCCTGATAGTCAGGTTGTTCTTGTAATTGCTGGGGATGGCEST: gi|351054495|gb|FQ450579.1|FQ450579
genomic: CCGACAAACATGCTAATCCTGTTCATATTGCTGCAGATTTGTTGTCCCAGgtgtgtaatc ... ttatttccagGCTGAGCATGGCCCTGATAGTCAGGTTGTTCTTGTAATTGCTGGGGATGGC
EST: CCGACAAACATGCTAATCCTGTTCATATTGCTGCAGATTTGTTGTCCCAG GCTGAGCATGGCCCTGATAGTCAGGTTGTTCTTGTAATTGCTGGGGATGGCEST: gi|71882273|gb|DT031328.1|DT031328
genomic: CCGACAAACATGCTAATCCTGTTCATATTGCTGCAGATTTGTTGTCCCAGgtgtgtaatc ... ttatttccagGCTGAGCATGGCCCTGATAGTCAGGTTGTTCTTGTAATTGCTGGGGATGGC
EST: CCGACAAACATGCTAATCCTGTTCATATTGCTGCAGATTTGTTGTCCCAG GCTGAGCATGGCCCTGATAGTCAGGTTGTTCTTGTAATTGCTGGGGATGGC
genomic: CCGACAAACATGCTAATCCTGTTCATATTGCTGCAGATTTGTTGTCCCAGgtgtgtaatc ... ttatttccagGCTGAGCATGGCCCTGATAGTCAGGTTGTTCTTGTAATTGCTGGGGATGGC
tgctttcaattttcatactatttcatccctgatgtttcaattgacttatttccagGCTGAGCATGGCCCTGATAGTCAGGTTGTTCTTGTAATTGCTGGGGATGGCGTGGACCTAAGGGCTATTGAGGAGGAAATCAGCAAGCAGTGCCAAAGCC
aattgac putative branch site (score: 3)
cttatttcc CT-rich tract
aattttcatactattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cccctatttccatatgcatgtgtaaagcaaagtttttaagttctctgctttcaattttcatactatttcatccctgatgtttcaattgacttatttccagGCTGAGCATGGCCCTGATAGTCAGGTTGTTCTTGTAATTGCTGGGGATGGCGTGGACCTAAGGGCTATTGAGGAGGAAATCAGCAAGCAGTGCCAAAGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
cccctat
- - - - -ccatatg
- - - - - - - - catgtgt
- - - - - - - - - - - -aaagcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcatccc