Sequence
atgc intronic sequence ATGC exonic sequencegtacagtttccttcaatggagctggtgttcaagcttttagtttgtattattggtagtatgttaaagaatctcggttgtgtggaattacagctcattgttcttctgtctcaatgtgtgtcgttcagTATGGTATAGAATTTGCTGCTGAGCATGTCCTTCCACTACTCACACCTCTTCTCATTGCTCAACAATTGAATGTTCAACAGTTTGCAAAGTACATGCTCT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0089g00030.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA12G37070.1 (Glycine max), 3'ss of exon 12
gtacagtttccttcaatggagctggtgttcaagcttttagtttgtattattgg-tagtatgttaaagaatctc---ggttgt-gtggaattacagct--cattgttcttctgtctcaatgtgtgtcgttcagTATGGTATAGAATTTGCTGCTGAGCATGTCCTTCCACTACTCACACCTCTTCTCATTGCTCAACAATTGAATGTTCAACAGTTTGCAAAGTACATGCTCT
||| | |||| ||| ||| | | | ||| |||||||| | |||| | || || | ||||| | ||| | | || | ||| | | | | | | |||||||||| ||||||||| ||||||||||| |||||| | || | ||| || || | |||||||||||||||||||||||||||||| || || |||||||
gta-aatttcaaatgatgagcctgacataaatcacagttttttatattattgactgctatgatcaacgatatttggagttgttgctaaatagtatttggaatcatacttgtctttttttttctcctcttcagTATGGAGTAGAATTTGTAGCTGAGCATGTTCTTCCATTGCTTATACCCCTGCTGACTGCTCAACAATTGAATGTTCAACAGTTTGCCAAATATATGCTCT
upper sequence: Vv18s0089g00030.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA09G00470.1 (Glycine max), 3'ss of exon 12
gtacagtttccttcaatggagctggtgt---tca-agcttttagtttgtattattgg-tagtatg--ttaaagaatctcggttgtgtggaattacagctcattgttc--ttctgtctcaatgtgtgtcgttcagTATGGTATAGAATTTGCTGCTGAGCATGTCCTTCCACTACTCACACCTCTTCTCATTGCTCAACAATTGAATGTTCAACAGTTTGCAAAGTACATGCTCT
||| | |||| ||| | ||| ||| || |||| ||| | |||||| | |||| | || | | | | ||| |||| | | ||| | | | | ||||||||||||| ||||||||| ||||||||| | |||||| | || | || || || | ||||| |||||||||||||||||||||||| || || |||||||
gta-aatttcaaatgatgaacctgacacgaatcacagttttttttttatgttattgactgctatgatctttggagttgttgctaaatattatttggagtcatacctaagtcttgtttttttttttctcgttcagTATGGAGTAGAATTTGTAGCTGAGCATCTTCTTCCATTGCTTATGCCCCTGCTGACTGCTCCACAATTGAATGTTCAACAGTTTGCCAAATATATGCTCT
upper sequence: Vv18s0089g00030.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: AT1G22870.1 (Arabidopsis thaliana), 3'ss of exon 12
gtacagtttccttcaatggagctggtgttcaagcttttagtttgtattattggtagtatgttaaagaatctcggttgtgtggaattacagctcattgttcttctgtctcaatgtgtgtcgttcagTATGGTATAGAATTTGCTGCTGAGCATGTCCTTCCACTACTCACACCTCTTCTCATTGCTCAACAATTGAATGTTCAACAGTTTGCAAAGTACATGCTCT
| ||| ||| || | || | ||| ||||| | ||||| || | | || |||| || | | |||| || | | ||||||| | ||||| || | || || || ||||| || | | ||| ||||||| ||| |||||||||||||| ||||||||||| || || || || |
--------------------gtaggtaaaagtagtttactttctcaataatattag-atgtttgaaaatcttaattttcaatattt----ttcatagtgcct---tctccatcatttctttctagTATGGAGTTGAATTCACTTCAGAACACGTACTTCCCCTGATTATACCACTTCTCACTGCCCAACAATTGAATGTCCAACAGTTTGCCAAATATATTCTAT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcggttgtgtggaattacagctcattgttcttctgtctcaatgtgtgtcgttcagTATGGTATAGAATTTGCTGCTGAGCATGTCCTTCCACTACTCACACCTCTTCTCATTGCTCAACAATTGAATGTTCAACAGTTTGCAAAGTACATGCTCT
aattaca TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtacagtttccttcaatggagctggtgttcaagcttttagtttgtattattggtagtatgttaaagaatctcggttgtgtggaattacagctcattgttcttctgtctcaatgtgtgtcgttcagTATGGTATAGAATTTGCTGCTGAGCATGTCCTTCCACTACTCACACCTCTTCTCATTGCTCAACAATTGAATGTTCAACAGTTTGCAAAGTACATGCTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG