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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcaaacaagcacttaagaaaattgttatgccaccttttttcctcccaactatttgtattacttacactcactttttttctgttccagGGGTGCTTCTATAGTGGGCTTGATTAGGGTGCGCCCCACTTATCCATTTGGTGTGGATCCTAAGTGGCATGGTTCTCGCAGTGAGTTGCCATTTCTTAAC

Basic information

species Vitis vinifera
transcript Vv18s0001g13410.t01
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g13410.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA06G03040.1 (Glycine max), 3'ss of exon 12
------gtcaa-acaagcacttaagaaaattgttatgccaccttttttcctcccaactatttgtattacttacactcactttttttctgttccagGGGTGCTTCTATAGTGGGCTTGATTAGGGTGCGCCCCACTTATCCATTTGGTGTGGATCCTAAGTGGCATGGTTCTCGCAGTGAGTTGCCATTTCTTAAC
       | |  ||||    || |  | |||  | | |  | | | ||  |   |   | ||  |||   |      | | ||  | | || ||||| |||||||| |   || || || |  |||||   ||||||||||||||||||||||||||| ||||||||  |||| |||||  | ||||||||||| 
gtggttattagtacaatttattcaacagattacttttct-cttctattaattgaattgacttaaattgtgtgtgtgtaatattcat-tattacagGGATGCTTCTACAACAGGTTTTATAAAAGTGCGTAGCACTTATCCATTTGGTGTGGATCCTAAATGGCATGGAACTCGGAGTGAACTTCCATTTCTTAAT

upper sequence: Vv18s0001g13410.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA04G03010.1 (Glycine max), 3'ss of exon 13
gtcaaacaagcacttaagaaaattgttatgccaccttttttcctcccaactatttgtattacttacactcacttttttt-ctgttccagGGGTGCTTCTATAGTGGGCTTGATTAGGGTGCGCCCCACTTATCCATTTGGTGTGGATCCTAAGTGGCATGGTTCTCGCAGTGAGTTGCCATTTCTTAAC------------------------------------
||  ||   | | | || |  |||  | | |    | | ||  |   |   | ||  ||||  |       |  | |||  | || ||||| |||||||| |   || || || |  |||||   ||||||||||||||| ||||||||||| || |||||| |||| |||||  |||||||||||||                                     
gtagaat--gtattcaacaggattagtcttct-tttctattaattgaattgacttaaattatatgtgtgtgcaatatttattattacagggatgcttctacaacaggtttcataaaagtgcgtagCACTTATCCATTTGGCGTGGATCCTAAATGCCATGGTACTCGGAGTGAACTGCCATTTCTTAATTCTTTGAAGATGAAGATGTCAATTCTGCTGGGGGTA

upper sequence: Vv18s0001g13410.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: AT2G21410.1 (Arabidopsis thaliana), 3'ss of exon 12
gtcaaacaagcacttaagaaaattgttatgccaccttttttcctcccaactatttg----tattacttacactcactttttttctgttccagGGGTGCTTCTATAGTGGGCTTGATTAGGGTGCGCCCCACTTATCCATTTGGTGTGGATCCTAAGTGGCATGGTTCTCGCAGTGAGTTGCCATTTCTTAAC
||    |||    ||   |||    ||        |   ||      |  | |||     | | | || |  ||   |  | |||  | ||| |  ||| ||| | | ||  |||| |     ||   |||||||||||||||||||||||||  |||||||||| | ||||||||| | ||||| || || 
gtatgtcaacttgttctcaaacccctttaaaggaatgcattaaaggaatatctttaagattctgagtttctgtcttctgctctcttgttcagTGAGGCTACTACAATTGGTCTGATCAAAACCCGAGACACTTATCCATTTGGTGTGGATCCTGTGTGGCATGGTACCCGCAGTGAGCTACCATTCCTAAAT

upper sequence: Vv18s0001g13410.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: AT4G39080.1 (Arabidopsis thaliana), 3'ss of exon 12
----------------------------------gtcaaacaagcactt----aagaaaattgttatgccaccttttttcctcccaactatttgtattacttacactcactttttttctgtt--ccagGGGTGCTTCTATAGTGGGCTTGATTAGGGTGCGCCCCACTTATCCATTTGGTGTGGATCCTAAGTGGCATGGTTCTCGCAGTGAGTTGCCATTTCTTAAC
                                      || |||||  |    |  | ||||||      | ||||     ||  |  | ||| ||||  ||     |  ||| ||    ||   ||| |  ||| | | | | || ||||| | |||  |   |||||||||||||||| | ||||||  ||||||||| || ||||||||| ||||||| || |||
gtattcaggctacttctaataattcaggtttttaaatgaaaaagcatattagtagaacaattgtaggaatatctttacggttctgatttttttttattttttttttccgttttcttctctttgttcagCGAAGCTACAACAATTGGTTTGATAAAGGTCAGAGACACTTATCCATTTGGTCTAGATCCTGTGTGGCATGGATCCCGCAGTGAGCTGCCATTCCTGAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccttttttcctcccaactatttgtattacttacactcactttttttctgttccagGGGTGCTTCTATAGTGGGCTTGATTAGGGTGCGCCCCACTTATCCATTTGGTGTGGATCCTAAGTGGCATGGTTCTCGCAGTGAGTTGCCATTTCTTAAC
                                cactcactttttttct  CT-rich tract
                 tatttgtattactta  TA-rich tract