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gtacaattgaagaataactttcagaatgttttgtttagtgcaaattgtatagtcatgttgcaggagagaagtttagttcatctaacacagatccttgtgctatgtagGTTATTGCCACAGGAATTACTACATGGTTGCTGGACAAAGCTGGACGTCGGCTTCTACTTATT
species | Vitis vinifera |
transcript | Vv18s0001g12560.t01 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: GGGTTTCATCAAGTAATTTGGCTACATGTTTAGTTGGGGTTATTCAG GTTATTGCCACAGGAATTACTACATGGTTGCTGGACAAAGCTGGACGTCGGEST: gi|110384138|gb|EC948555.1|EC948555
genomic: GGGTTTCATCAAGTAATTTGGCTACATGTTTAGTTGGGGTTATTCAGgtacaattga ... tgctatgtagGTTATTGCCACAGGAATTACTACATGGTTGCTGGACAAAGCTGGACGTCGG
EST: GGGTTTCATCAAGTAATTTGGCTACATGTTTAGTTGGGGTTATTCAG GTTATTGCCACAGGAATTACTACATGGTTGCTGGACAAAGCTGGACGTCGGEST: gi|33404093|gb|CF209720.1|CF209720
genomic: GGGTTTCATCAAGTAATTTGGCTACATGTTTAGTTGGGGTTATTCAGgtacaattga ... tgctatgtagGTTATTGCCACAGGAATTACTACATGGTTGCTGGACAAAGCTGGACGTCGG
EST: GGGTTTCATCAAGTAATTTGGCTACACGTTTAGTTGGGGTTATTCAG GTTATTGCCACAGGAATTACTACATGGTTGCTGGACAAAGCTGGACGTCGGEST: gi|110382391|gb|EC939356.1|EC939356
genomic: GGGTTTCATCAAGTAATTTGGCTACATGTTTAGTTGGGGTTATTCAGgtacaattga ... tgctatgtagGTTATTGCCACAGGAATTACTACATGGTTGCTGGACAAAGCTGGACGTCGG
EST: GGGTTTCATCAAGTAATTTGGCTACATGTTTAGTTGGGGTTATTCAG GTTATTGCCACAGGAATTACTACATGGTTGCTGGACAAAGCTGGACGTCGGEST: gi|351014223|gb|FQ434812.1|FQ434812
genomic: GGGTTTCATCAAGTAATTTGGCTACATGTTTAGTTGGGGTTATTCAGgtacaattga ... tgctatgtagGTTATTGCCACAGGAATTACTACATGGTTGCTGGACAAAGCTGGACGTCGG
EST: GGGTTTCATCAAGTAATTTGGCTACATGTTTAGTTGGGGTTATTCAG GTTATTGCCACAGGAATTACTACATGGTTGCTGGACAAAGCTGGACGTCGG
genomic: GGGTTTCATCAAGTAATTTGGCTACATGTTTAGTTGGGGTTATTCAGgtacaattga ... tgctatgtagGTTATTGCCACAGGAATTACTACATGGTTGCTGGACAAAGCTGGACGTCGG
tcatgttgcaggagagaagtttagttcatctaacacagatccttgtgctatgtagGTTATTGCCACAGGAATTACTACATGGTTGCTGGACAAAGCTGGACGTCGGCTTCTACTTATT
atctaac putative branch site (score: 2)
tccttgt putative PPT
aagttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacaattgaagaataactttcagaatgttttgtttagtgcaaattgtatagtcatgttgcaggagagaagtttagttcatctaacacagatccttgtgctatgtagGTTATTGCCACAGGAATTACTACATGGTTGCTGGACAAAGCTGGACGTCGGCTTCTACTTATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA