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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgagtttggctttatttttgttttagtcttgttagttaatatccttttgatgggtgtagtgttgcttctctttcttttcctgcagCTGCTACTGGGATCTCATTTCTTCAATTTGCTAACAGTAATTCCATGAGAAACCTCTACGTCTTGGGGTTGTCCCTGTTCCTTGGGGTATCAATATCTCA

Basic information

species Vitis vinifera
transcript Vv18s0001g11260.t01
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110387805|gb|EC952502.1|EC952502
EST:     TCCTTTACCAATATTTGCTGCCATATACTGTGTTCTATTTGGCATTGTTG                         CTGCTACTGGGATCTCATTTCTTCAATTTGCTAACAGTAATTCCATGAGAA
genomic: TCCTTTACCAATATTTGCTGCCATATACTGTGTTCTATTTGGCATTGTTGgtgagtgagt ... tttcctgcagCTGCTACTGGGATCTCATTTCTTCAATTTGCTAACAGTAATTCCATGAGAA
EST: gi|22015462|gb|BQ800496.1|BQ800496
EST:     TCCTTTACCAATATTTGCTGCCATATACTGTGTTCTATTTGGCATTGTTG                         CTGCTACTGGGATCTCATTTCTTCAATTTGCAAACAGTAATTCCATGAGAA
genomic: TCCTTTACCAATATTTGCTGCCATATACTGTGTTCTATTTGGCATTGTTGgtgagtgagt ... tttcctgcagCTGCTACTGGGATCTCATTTCTTCAATTTGCTAACAGTAATTCCATGAGAA
EST: gi|27581681|gb|CB004376.1|CB004376
EST:     TCCTTTACCAATATTTGCTGCCATATACTGTGTTCTATTTGGCATTGTTG                         CTGCTACTGGGATCTCATTTCTTCAATTTGCTAACAGTAATTCCATGAGAA
genomic: TCCTTTACCAATATTTGCTGCCATATACTGTGTTCTATTTGGCATTGTTGgtgagtgagt ... tttcctgcagCTGCTACTGGGATCTCATTTCTTCAATTTGCTAACAGTAATTCCATGAGAA
EST: gi|46917625|gb|CN546954.1|CN546954
EST:     TCCTTTACCAATATTTGCTGCCATATACTGTGTTCTATTTGGCATTGTTG                         CTGCTACTGGGATCTCATTTCTTCAATTTGCTAACAGTAATTCCATGAGAA
genomic: TCCTTTACCAATATTTGCTGCCATATACTGTGTTCTATTTGGCATTGTTGgtgagtgagt ... tttcctgcagCTGCTACTGGGATCTCATTTCTTCAATTTGCTAACAGTAATTCCATGAGAA
EST: gi|110413208|gb|EC978987.1|EC978987
EST:     TCCTTTACCAATATTTGCTGCCATATACTGTGTTCTATTTGGCATTGTTG                         CTGCTACTGGGATCTCATTTCTTCAATTTGCAAACAGTAATTCCATGAGAA
genomic: TCCTTTACCAATATTTGCTGCCATATACTGTGTTCTATTTGGCATTGTTGgtgagtgagt ... tttcctgcagCTGCTACTGGGATCTCATTTCTTCAATTTGCTAACAGTAATTCCATGAGAA
EST: gi|30328659|gb|CD011921.1|CD011921
EST:     TCCTTTACCAATATTTGCTGCCATATACTGTGTTCTATTTGGCATTGTTG                         CTGCTACTGGGATCTCATTTCTTCAATTTGCTAACAGTAATTCCATGAGAA
genomic: TCCTTTACCAATATTTGCTGCCATATACTGTGTTCTATTTGGCATTGTTGgtgagtgagt ... tttcctgcagCTGCTACTGGGATCTCATTTCTTCAATTTGCTAACAGTAATTCCATGAGAA
EST: gi|110718405|gb|EE095198.1|EE095198
EST:     TCCTTTACCAATATTTGCTGCCATATACTGTGTTCTATTTGGCATTGTTG                         CTGCTACTGGGATCTCATTTCTTCAATTTGCAAACAGTAATTCCATGAGAA
genomic: TCCTTTACCAATATTTGCTGCCATATACTGTGTTCTATTTGGCATTGTTGgtgagtgagt ... tttcctgcagCTGCTACTGGGATCTCATTTCTTCAATTTGCTAACAGTAATTCCATGAGAA
EST: gi|110717478|gb|EE093371.1|EE093371
EST:     TCCTTTACCAATATTTGCTGCCATATACTGTGTTCTATTTGGCATTGTTG                         CTGCTACTGGGATCTCATTTCTTCAATTTGCTAACAGTAATTCCATGAGAA
genomic: TCCTTTACCAATATTTGCTGCCATATACTGTGTTCTATTTGGCATTGTTGgtgagtgagt ... tttcctgcagCTGCTACTGGGATCTCATTTCTTCAATTTGCTAACAGTAATTCCATGAGAA
EST: gi|22013116|gb|BQ798150.1|BQ798150
EST:     TCCTTTACCAATATTTGCTGCCATATACTGTGTTCTATTTGGCATTGTTG                         NTGCTANTGGGATCTCATTTCTTCAATTTGCTAACAGTAATTCCATGAGAA
genomic: TCCTTTACCAATATTTGCTGCCATATACTGTGTTCTATTTGGCATTGTTGgtgagtgagt ... tttcctgcagCTGCTACTGGGATCTCATTTCTTCAATTTGCTAACAGTAATTCCATGAGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttagttaatatccttttgatgggtgtagtgttgcttctctttcttttcctgcagCTGCTACTGGGATCTCATTTCTTCAATTTGCTAACAGTAATTCCATGAGAAACCTCTACGTCTTGGGGTTGTCCCTGTTCCTTGGGGTATCAATATCTCA
              ttttgat  putative branch site (score: 4)
                             tgttgcttctctttct  putative PPT
     ttaatat  TA-rich tract