Sequence
atgc intronic sequence ATGC exonic sequence...atgaatttctagtatccatttttatgtaggtgttgcttgttttttcattctcttctgctttggttcctttgttcatttcgaatttattttattatgcaagGCTGAAATGAAGCGGTTTGCAAGTGCTGATACATCAGTTCTTAAACTACATTATGAGAAGAAACTTCTGGAATTGGAACAAGAGAAGAAAGCGTTGCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0001g07550.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA02G37800.1 (Glycine max), 3'ss of exon 13
-------------------------------------------------------------------------------------------atgaatttctagtatccatttttatgtaggtgttgc-ttgttttttcattctcttctgct-ttggttcctttgttcatttcgaatttattttattatgcaagGCTGAAATGAAGCGGTTTGCAAGTGCTGATACATCAGTTCTTAAACTACATTATGAGAAGAAACTTCTGGAATTGGAACAAGAGAAGAAAGCGTTGCAG
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gtaatagcttcaaactcgtgaagacattggatatgcattttatcaagttgtcatttgctagtatctttatcaaattagataaatttgcaagatattggatggatatgcattttattccatgtttagtattgattctcaagcatgttttactgtcgaatgctttttatactt----tttttttggttgttgaagGCTGAAATGAAGATGTTTAATAATGCTGATACTTCAGTTCTTAAGCATCATTATGAAAAGAAAGTTCTTGAGTTAGAACAAGAGAAGAAATTTTTGCAG
upper sequence: Vv18s0001g07550.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA14G36030.1 (Glycine max), 3'ss of exon 13
-----------------------------------------------------------------------------------------------------atgaatttctagtatccatttttatgtaggtgttgcttgttttttcattctcttctgctttggttcctttgttcatttcgaatttattttattatgcaagGCTGAAATGAAGCGGTTTGCAAGTGCTGATACATCAGTTCTTAAACTACATTATGAGAAGAAACTTCTGGAATTGGAACAAGAGAAGAAAGCGTTGCAG
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gtaatagtttctggatatagcttcaaatttgtgaagacattgaatattttgttttgtcaagttttcatttgctaatatcttcatcaaattagacaaatttgcaagatattggatatgcattttattccatgtttagtattgactttcgagcatgtttttactgtctaatgtttttttttc---tttctttttttgttgaagGCTGAAATGAAGATGTTCAACAATTCTGATACTTCAGTTCTTAAGCATCATTATGAAAAGAAAGTTCTTGAGTTAGAACAAGAGAAGAAATTTTTGCAG
upper sequence: Vv18s0001g07550.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA04G10080.1 (Glycine max), 3'ss of exon 12
------atgaatttctagtatccatttttatgtaggtgttgcttgttttttcattctcttctgctttggttcctttgttcatttcgaatttattttattatgcaagGCTGAAATGAAGCGGTTTGCAAGTGCTGATACATCAGTTCTTAAACTACATTATGAGAAGAAACTTCTGGAATTGGAACAAGAGAAGAAAGCGTTGCAG
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attgcaaagcatggcttaaatctattgtattacatgttaagtctagggatatgattttttttaacatgtttctactttttattt---gtttctctggttg---aagGCTGAAATGAAGCTGTACAGTAATTCTGATGCTTCAGTTCTTAGGCATCATTATGAAAAGAAACTTCTTGAGATGGAACAAGAGAAGAAAATGTTGCAG
upper sequence: Vv18s0001g07550.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: AT5G60930.1 (Arabidopsis thaliana), 3'ss of exon 13
atgaatttctagtatccatttttatgtaggtgttgcttgttttttcattctcttctgctttggttcctttgttcatttcgaatttattttattatgcaagGCTGAAATGAAGCGGTTTGCAAGTGCTGATACATCAGTTCTTAAACTACATTATGAGAAGAAACTTCTGGAATTGGAACAAGAGAAGAAAGCGTTGCAG
| ||| | || | ||| || | | || || | | | | | ||| | | | ||| || | || | ||| | ||| ||||||||||||||||| ||| |||||| || |||||| ||||| |||| ||| |||||||| ||| || || | ||||| || || | ||| | |||
-----gtactattctcaagtttagagt-gctcttctttatagtctttcatctatttccttaagatagtatgtctat---aacttcaatttttcatg-aagGCTGAAATGAAGCGCTTTTCAAGTGGTGGTACATCTGTTCTCAAACAACACTATGAGAAAAAAGTTTATGACCTAGAACAGGAAAAAAGAGCACTACAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cattctcttctgctttggttcctttgttcatttcgaatttattttattatgcaagGCTGAAATGAAGCGGTTTGCAAGTGCTGATACATCAGTTCTTAAACTACATTATGAGAAGAAACTTCTGGAATTGGAACAAGAGAAGAAAGCGTTGCAG
ttttatt CT-rich tract
tttgttcatttcgaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
atgaatttctagtatccatttttatgtaggtgttgcttgttttttcattctcttctgctttggttcctttgttcatttcgaatttattttattatgcaagGCTGAAATGAAGCGGTTTGCAAGTGCTGATACATCAGTTCTTAAACTACATTATGAGAAGAAACTTCTGGAATTGGAACAAGAGAAGAAAGCGTTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - -gtatcca
- - - - - - - - - - - - -gtaggtg
- - - - - - - - - - - - - - - - -tgcttgt