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...tttgatctcagttataaatctaaaatactggaaatagaacaataggttgtagtagcctttttccaatgttaatatctgttaattggttcttttgttacagATTTTGGTTTCATGCTTTGTGAAAACCCCACGTTTTGAAGAGTACCTTTGTGTGAAG
species | Vitis vinifera |
transcript | Vv18s0001g07500.t01 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: ATAGAAGAGTGTTTCTGGACTATATTGATCCAGAGAACCAGGCTCTTTTG ATTTTGGTTTCATGCTTTGTGAAAACCCCACGTTTTGAAGAGTACCTTTGTEST: gi|32249867|gb|CD715686.1|CD715686
genomic: ATAGAAGAGTGTTTCTGGACTATATTGATCCAGAGAACCAGGCTCTTTTGgtaaggccat ... tttgttacagATTTTGGTTTCATGCTTTGTGAAAACCCCACGTTTTGAAGAGTACCTTTGT
EST: ATAGAAGAGTGTTTCTGGACTATATTGATCCAGAGAACCAGGCTCTTTTG ATTTTGGTTTCATGCTTTGTGAAAACCCCACGTTTTGAAGAGTACCTTTGT
genomic: ATAGAAGAGTGTTTCTGGACTATATTGATCCAGAGAACCAGGCTCTTTTGgtaaggccat ... tttgttacagATTTTGGTTTCATGCTTTGTGAAAACCCCACGTTTTGAAGAGTACCTTTGT
gttgtagtagcctttttccaatgttaatatctgttaattggttcttttgttacagATTTTGGTTTCATGCTTTGTGAAAACCCCACGTTTTGAAGAGTACCTTTGTGTGAAG
tgttaat putative branch site (score: 3)
ttcttttgtt putative PPT
ttaatatctgttaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttgatctcagttataaatctaaaatactggaaatagaacaataggttgtagtagcctttttccaatgttaatatctgttaattggttcttttgttacagATTTTGGTTTCATGCTTTGTGAAAACCCCACGTTTTGAAGAGTACCTTTGTGTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - -aaaatac
- - - - - - - - - - - - - - -ggaaata
- - - - - - - - - - - - - - - - - - -aacaata