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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggagactttccgattagtagcataattgttattctagatccattatcaaatgtatgcttgaagatctaatcagactttgattctcttctttatgttagGATGAAAATTGAAAAGATTGCTGGCAGTTCTCAATATTTTCTTTTGCACCTATGTACCCAG

Basic information

species Vitis vinifera
transcript Vv18s0001g00500.t01
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g00500.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA14G39890.2 (Glycine max), 3'ss of exon 11
gttggagactttccgattagtagcataattgttattctagatccattatcaaatgtatgcttg-----aagatctaatcagactttgattctcttctttatgttagGATGAAAATTGAAAAGATTGCTGGCAGTTCTCAATATTTTCTTTTGCACCTATGTACCCAG
  | | |   ||||  ||| |   ||  || | || | |  | || ||| ||||     || |      | || | | ||  | ||| |  |  ||   || ||||||||||||  || |  ||||| || ||||| |||||||||||||||||||||||||| |||
-gtagggttcttccatttattg--attgttat-atgccatgttcactatgaaattctgactagtaactgaaatttcaccatcccttgctgtttctcaa-atcttagGATGAAAACAGAGACAATTGCGGGAAGTTCCCAATATTTTCTTTTGCACCTATGTACACAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33402290|gb|CF207917.1|CF207917
EST:     AGGGTGCTTCACCGACGAAGTCCATTAGAACGTGAAAAGATTATACATTG                         GATGAAAATTGAAAAGATTGCTGGCAGTTCTCAATATTTTCTTTTGCACCT
genomic: AGGGTGCTTCACCGACGAAGTCCATTAGAACGTGAAAAGATTATACATTGgttggagact ... tttatgttagGATGAAAATTGAAAAGATTGCTGGCAGTTCTCAATATTTTCTTTTGCACCT
EST: gi|33402370|gb|CF207997.1|CF207997
EST:     AGGGTGCTTCACCGACGAAGTCCATTAGAACGTGAAAAGATTATACATTG                         GATGAAAATTGAAAAGATTGCTGGCAGTTCTCAATATTTTCTTTTGCACCT
genomic: AGGGTGCTTCACCGACGAAGTCCATTAGAACGTGAAAAGATTATACATTGgttggagact ... tttatgttagGATGAAAATTGAAAAGATTGCTGGCAGTTCTCAATATTTTCTTTTGCACCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatcaaatgtatgcttgaagatctaatcagactttgattctcttctttatgttagGATGAAAATTGAAAAGATTGCTGGCAGTTCTCAATATTTTCTTTTGCACCTATGTACCCAG
                               ctttgattctcttctt  CT-rich tract
                                             tttatgtta  TA-rich tract