Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacttcttttattttttatttttgatggatttaagggtacttcttttatttaaaaagtgcatctctctttggtttgagcaatataactaatttggattcctttgcatatctggtctgctttaatttatttcttgactaattactacctttttctttttgaactgttagGGAGGTGACGCATCTGTAAATGGCGTTCATCTTTTCCCCAAAAATACAGACCATATTATTGTGTGTAACAGGACATCATCAATATACCTTATGACACTTC

Basic information

species Vitis vinifera
transcript Vv17s0000g08930.t01
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv17s0000g08930.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: AT1G73720.1 (Arabidopsis thaliana), 3'ss of exon 12
gtacttcttttattttttatttttgatggatttaagggtacttcttttatttaaaaagtgcatctctctttggtttgagcaatataactaatttggattcctttgcatatctggtctgctttaatttatttcttgactaattactacctttttctttttgaactgttagGGAGGTGACGCATCTGTAAATGGCGTTCATCTTTTCCCCAAAAATACAGACCATATTATTGTGTGTAACAGGACATCATCAATATACCTTATGACACTTC
                                                           | |||| |  ||     ||   || ||   |  ||| | | ||||     |||| ||| || |     | |  |||  ||   | |      |   ||||||| | | |||||  ||| ||||| || ||     ||||  | ||||||||||| ||||| || ||| ||||||| |||| ||||||||| |||||| |||||||||| |
-----------------------------------------------------------gtatcttttcttatacagatttatgta--catcttgtaatactttt----tctgatcttctgtggcaaactctttggttaccaagt-----ctgaattttgaaatat-agGGAACTGATGCATCAGTCAACTCTATTCACTTGTTCCCCAAAAACACAGAACACATTGTTGTGTGCAACAAGACATCATCTATATACATTATGACACTCC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351014184|gb|FQ434773.1|FQ434773
EST:     TGAAGACAACCGACTGTTTGCAGACATTTAAGCCACCACCTCCTTTAAGG                         GGAGGTGACGCATCTGTAAATGGCGTTCATCTTTTCCCCAAAAATACAGAC
genomic: TGAAGACAACCGACTGTTTGCAGACATTTAAGCCACCACCTCCTTTAAGGgtacttcttt ... gaactgttagGGAGGTGACGCATCTGTAAATGGCGTTCATCTTTTCCCCAAAAATACAGAC
EST: gi|33403518|gb|CF209145.1|CF209145
EST:     TGAAGACAACCGACTGTTTGCAGACATTTAAGCCACCACCTCCTTTAAGG                         GGAGGTGACGCATCTGTAAATGGCGTTCATCTTTTCCCCAAAAATACAGAC
genomic: TGAAGACAACCGACTGTTTGCAGACATTTAAGCCACCACCTCCTTTAAGGgtacttcttt ... gaactgttagGGAGGTGACGCATCTGTAAATGGCGTTCATCTTTTCCCCAAAAATACAGAC
EST: gi|110430180|gb|EC996718.1|EC996718
EST:     TGAAGACAACCGACTGTTTGCAGACATTTAAGCCACCACCTCCTTTAAGG                         GGAGGTGACGCATCTGTAAATGGCGTTCATCTTTTCCCCAAAAATACAGAC
genomic: TGAAGACAACCGACTGTTTGCAGACATTTAAGCCACCACCTCCTTTAAGGgtacttcttt ... gaactgttagGGAGGTGACGCATCTGTAAATGGCGTTCATCTTTTCCCCAAAAATACAGAC
EST: gi|110686642|gb|EE064514.1|EE064514
EST:     TGAAGACAACCGACTGTTTGCAGACATTTAAGCCACCACCTCCTTTAAGG                         GGAGGTGACGCATCTGTAAATGGCGTTCATCTTTTCCCCAAAAATACAGAC
genomic: TGAAGACAACCGACTGTTTGCAGACATTTAAGCCACCACCTCCTTTAAGGgtacttcttt ... gaactgttagGGAGGTGACGCATCTGTAAATGGCGTTCATCTTTTCCCCAAAAATACAGAC
EST: gi|110387409|gb|EC952071.1|EC952071
EST:     TGAAGACAACCGACTGTTTGCAGACATTTAAGCCACCACCTCCTTTAAGG                         GGAGGTGACGCATCTGTAAATGGCGTTCATCTTTTCCCCAAAAATACAGAC
genomic: TGAAGACAACCGACTGTTTGCAGACATTTAAGCCACCACCTCCTTTAAGGgtacttcttt ... gaactgttagGGAGGTGACGCATCTGTAAATGGCGTTCATCTTTTCCCCAAAAATACAGAC
EST: gi|110687493|gb|EE064965.1|EE064965
EST:     TGAAGACAACCGACTGTTTGCAGACATTTAAGCCACCACCTCCTTTAAGG                         GGAGGTGACGCATCTGTAAATGGCGTTCATCTTTTCCCCAAAAATACAGAC
genomic: TGAAGACAACCGACTGTTTGCAGACATTTAAGCCACCACCTCCTTTAAGGgtacttcttt ... gaactgttagGGAGGTGACGCATCTGTAAATGGCGTTCATCTTTTCCCCAAAAATACAGAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctgctttaatttatttcttgactaattactacctttttctttttgaactgttagGGAGGTGACGCATCTGTAAATGGCGTTCATCTTTTCCCCAAAAATACAGACCATATTATTGTGTGTAACAGGACATCATCAATATACCTTATGACACTTC
                    gactaat  putative branch site (score: 2)
                             ctacctttttcttttt  putative PPT
     tttaatttatttcttg  TA-rich tract