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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttggtctaactatttccaagtatatttccttcattccaggcctaagcaccaggggtgttgaaccaggagttaccacatatatctagtgccttgaaaatctatcatttggtaagggattccatttctttccatttaacaatactattggttttgacctctgaagGATCTAGATGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACTGGAGTTGATGTGAGCTTTGATTGCGTCGGCTTCAACAAAACCATGTCAACAGCTT

Basic information

species Vitis vinifera
transcript Vv16s0100g00290.t01
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110380732|gb|EC946021.1|EC946021
EST:     CAAAAGATCTTGGCGCAGACGATATTATCCGGGTTTCAACGAATATTCAG                         GATCTAGATGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACTGGAGTT
genomic: CAAAAGATCTTGGCGCAGACGACATTATCCGGGTTTCAACGAATATTCAGgtttggtcta ... acctctgaagGATCTAGATGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACTGGAGTT
EST: gi|110713731|gb|EE089908.1|EE089908
EST:     CAAAAGATCTTGGCGCAGACGATATTATCCGGGGTTCAACGAATATTCAG                         GATCTAGATGAAGAAGTGGCAAAA-TACCAAGCACAATGTTTACTGGNAGT
genomic: CAAAAGATCTTGGCGCAGACGACATTATCCGGGTTTCAACGAATATTCAGgtttggtcta ... acctctgaagGATCTAGATGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACTGG-AGT
EST: gi|110702046|gb|EE080314.1|EE080314
EST:     CCAAAGATCTTGGCGCAGACAATAT-ATCCGGGTTTCAACGAATATTCGG                         GATCTAAATGAGGAAGTGGC
genomic: CAAAAGATCTTGGCGCAGACGACATTATCCGGGTTTCAACGAATATTCAGgtttggtcta ... acctctgaagGATCTAGATGAAGAAGTGGC
EST: gi|351056349|gb|FQ454210.1|FQ454210
EST:     CAAAAGATCTTGGCGCAGACGACATTATCCGGGTTTCAACGAATATTCAG                         GATCTAGATGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACTGGAGTT
genomic: CAAAAGATCTTGGCGCAGACGACATTATCCGGGTTTCAACGAATATTCAGgtttggtcta ... acctctgaagGATCTAGATGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACTGGAGTT
EST: gi|110421757|gb|EC988057.1|EC988057
EST:     CAAAAGATCTTGGCGCAGACGATATTATCCGGGTTTCAACGAATATTCAG                         GATCTAGATGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACTGGAGTT
genomic: CAAAAGATCTTGGCGCAGACGACATTATCCGGGTTTCAACGAATATTCAGgtttggtcta ... acctctgaagGATCTAGATGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACTGGAGTT
EST: gi|110686942|gb|EE063920.1|EE063920
EST:     CAAAAGATCTTGGCGCAGACGATATTATCCGGGTTTCAACGAATATTCAG                         GATCTAGATGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACTGGAGTT
genomic: CAAAAGATCTTGGCGCAGACGACATTATCCGGGTTTCAACGAATATTCAGgtttggtcta ... acctctgaagGATCTAGATGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACTGGAGTT
EST: gi|110711468|gb|EE087981.1|EE087981
EST:     CAAAAGATCTTGGCGCAGACGATATTATCCGGGTTTCAACGAATATTCAG                         GATCTAGATGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACT
genomic: CAAAAGATCTTGGCGCAGACGACATTATCCGGGTTTCAACGAATATTCAGgtttggtcta ... acctctgaagGATCTAGATGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACT
EST: gi|110387722|gb|EC952414.1|EC952414
EST:     CAAAAGATCTTGGCGCAGACGATATTATCCGGGTTTCAACGAATATTCAG                         GATCTAGATGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACTGGAGTT
genomic: CAAAAGATCTTGGCGCAGACGACATTATCCGGGTTTCAACGAATATTCAGgtttggtcta ... acctctgaagGATCTAGATGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACTGGAGTT
EST: gi|51050534|gb|CO818600.1|CO818600
EST:     TTCAACGAATATTCAG                         GATCTAGATGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACTGGAGTT
genomic: TTCAACGAATATTCAGgtttggtcta ... acctctgaagGATCTAGATGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACTGGAGTT
EST: gi|110361691|gb|EC925184.1|EC925184
EST:     CAAAAGATCTTGGCGCAGACGATATTATCCGGGTTTCAACGAATATTCAG                         GATCTAGATGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACTGGAGTT
genomic: CAAAAGATCTTGGCGCAGACGACATTATCCGGGTTTCAACGAATATTCAGgtttggtcta ... acctctgaagGATCTAGATGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACTGGAGTT
EST: gi|351022714|gb|FQ428623.1|FQ428623
EST:     CAAAAGATCTTGGCGCAGACGATATTATCCGGGTTTCAACGAATATTCAG                         GATCTAGATGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACTGGAGTT
genomic: CAAAAGATCTTGGCGCAGACGACATTATCCGGGTTTCAACGAATATTCAGgtttggtcta ... acctctgaagGATCTAGATGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACTGGAGTT
EST: gi|349812173|gb|FQ410970.1|FQ410970
EST:     CAAAAGATCTTGGCGCAGACGATATTATCCGGGTTTCAACGAATATTCAG                         GATCTAGATGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACTGGAGTT
genomic: CAAAAGATCTTGGCGCAGACGACATTATCCGGGTTTCAACGAATATTCAGgtttggtcta ... acctctgaagGATCTAGATGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACTGGAGTT
EST: gi|110702995|gb|EE079453.1|EE079453
EST:     CAAAAGATCTTGGCGCAGACGATATTATCCGGGTTTCAACGAATATTCAG                         GATCTAGATGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACTGGAGTT
genomic: CAAAAGATCTTGGCGCAGACGACATTATCCGGGTTTCAACGAATATTCAGgtttggtcta ... acctctgaagGATCTAGATGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACTGGAGTT
EST: gi|110430276|gb|EC996819.1|EC996819
EST:     CAAAAGATCTTGGCGCAGACGATATTATCCGGGTTTCAACGAATATTCAG                         GATCTAGATGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACTGGAGTT
genomic: CAAAAGATCTTGGCGCAGACGACATTATCCGGGTTTCAACGAATATTCAGgtttggtcta ... acctctgaagGATCTAGATGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACTGGAGTT
EST: gi|110358853|gb|EC923372.1|EC923372
EST:     CAAAAGATCTTGGCGCAGACGATATTATCCGGGTTTCAACGAATATTCAG                         GATCTAGATGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACTGGAGTT
genomic: CAAAAGATCTTGGCGCAGACGACATTATCCGGGTTTCAACGAATATTCAGgtttggtcta ... acctctgaagGATCTAGATGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACTGGAGTT
EST: gi|110422161|gb|EC988475.1|EC988475
EST:     CAAAAGATCTTGGCGCAGACGATATTATCCGGGTTTCAACGAATATTCAG                         GATCTAGATGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACTGGAGTT
genomic: CAAAAGATCTTGGCGCAGACGACATTATCCGGGTTTCAACGAATATTCAGgtttggtcta ... acctctgaagGATCTAGATGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACTGGAGTT
EST: gi|110706383|gb|EE081871.1|EE081871
EST:     CGAATATTCAG                         GATCTAGATGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACTGGAGTT
genomic: CGAATATTCAGgtttggtcta ... acctctgaagGATCTAGATGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACTGGAGTT
EST: gi|110401034|gb|EC967627.1|EC967627
EST:     CAAAAGATCTTGGCGCAGACGATATTATCCGGGTTTCAACGAATATTCAG                         GATCTAGATGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACTGGAGTT
genomic: CAAAAGATCTTGGCGCAGACGACATTATCCGGGTTTCAACGAATATTCAGgtttggtcta ... acctctgaagGATCTAGATGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACTGGAGTT
EST: gi|349809705|gb|FQ398298.1|FQ398298
EST:     CAAAAGATCTTGGCGCAGACGATATTATCCGGGTTTCAACGAATATTCAG                         GATCTAGATGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACTGGAGTT
genomic: CAAAAGATCTTGGCGCAGACGACATTATCCGGGTTTCAACGAATATTCAGgtttggtcta ... acctctgaagGATCTAGATGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACTGGAGTT
EST: gi|110417000|gb|EC983020.1|EC983020
EST:     CAAAAGATCTTGGCGCAGACGATATTATCCGGGTTTCAACGAATATTCAG                         GATCTAGATGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACTGGAGTT
genomic: CAAAAGATCTTGGCGCAGACGACATTATCCGGGTTTCAACGAATATTCAGgtttggtcta ... acctctgaagGATCTAGATGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACTGGAGTT
EST: gi|110361037|gb|EC924488.1|EC924488
EST:     CCGGGTTTCAACGAATATTCAG                         GATCTAGATGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACTGGAGTT
genomic: CCGGGTTTCAACGAATATTCAGgtttggtcta ... acctctgaagGATCTAGATGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACTGGAGTT
EST: gi|30296050|gb|CB972844.1|CB972844
EST:     CAAAAGATCTTGGCGCAGACGATATTATCCGGGTTTCAACGAATATTCAG                         GATCTAGATGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACTGGAGTT
genomic: CAAAAGATCTTGGCGCAGACGACATTATCCGGGTTTCAACGAATATTCAGgtttggtcta ... acctctgaagGATCTAGATGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACTGGAGTT
EST: gi|56409690|gb|CX017942.1|CX017942
EST:     CAAAAGATCTTGGCGCAGACGATATTATCCGGGTTTCAACGAATATTCAG                         GATCTAGATGAAGAAGTGGCGAAAATACAAAGCACAATGGTTACTGGAGTT
genomic: CAAAAGATCTTGGCGCAGACGACATTATCCGGGTTTCAACGAATATTCAGgtttggtcta ... acctctgaagGATCTAGATGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACTGGAGTT
EST: gi|34319976|gb|CF372730.1|CF372730
EST:     CAAAAGATCTTGGCGCAGACGATATTATCCGGGTTTCAACGAATATTCAG                         GATCTAGATGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACTGGAGTT
genomic: CAAAAGATCTTGGCGCAGACGACATTATCCGGGTTTCAACGAATATTCAGgtttggtcta ... acctctgaagGATCTAGATGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACTGGAGTT
EST: gi|351045870|gb|FQ441055.1|FQ441055
EST:     CAAAAGATCTTGGCGCAGACGATATTATCCGGGTTTCAACGAATATTCAG                         GATCTAGATGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACTGGAGTT
genomic: CAAAAGATCTTGGCGCAGACGACATTATCCGGGTTTCAACGAATATTCAGgtttggtcta ... acctctgaagGATCTAGATGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACTGGAGTT
EST: gi|351017868|gb|FQ436221.1|FQ436221
EST:     CAAAAGATCTTGGCGCAGACGATATTATCCGGGTTTCAACGAATATTCAG                         GATCTAGATGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACTGGAGTT
genomic: CAAAAGATCTTGGCGCAGACGACATTATCCGGGTTTCAACGAATATTCAGgtttggtcta ... acctctgaagGATCTAGATGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACTGGAGTT
EST: gi|110699843|gb|EE077221.1|EE077221
EST:     CAAAAGATCTTGGCGCAGACGATATTATCCGGGTTTCAACGAATATTCAG                         GATCTAGATGAAGAAGTGGCAAAA-TACAAAGCACAATGGTTACTGGAGNT
genomic: CAAAAGATCTTGGCGCAGACGACATTATCCGGGTTTCAACGAATATTCAGgtttggtcta ... acctctgaagGATCTAGATGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACTGGAGTT
EST: gi|110417331|gb|EC983378.1|EC983378
EST:     CAAAAGATCTTGGCGCAGACGATATTATCCGGGTTTCAACGAATATTCAG                         GATCTAGATGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACTGGAGTT
genomic: CAAAAGATCTTGGCGCAGACGACATTATCCGGGTTTCAACGAATATTCAGgtttggtcta ... acctctgaagGATCTAGATGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACTGGAGTT
EST: gi|110369725|gb|EC933892.1|EC933892
EST:     CAAAAGATCTTGGCGCAGACGATATTATCCGGGTTTCAACGAATATTCAG                         GATCTAGATGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACTGGAGTT
genomic: CAAAAGATCTTGGCGCAGACGACATTATCCGGGTTTCAACGAATATTCAGgtttggtcta ... acctctgaagGATCTAGATGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACTGGAGTT
EST: gi|30252718|gb|CB970269.1|CB970269
EST:     AAAGATC-TGANGCGCAGACGATATTATCCGGGTTTCAACGAATATTCAG                         GATCTAGATGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACTGGAGTT
genomic: AAAGATCTTG--GCGCAGACGACATTATCCGGGTTTCAACGAATATTCAGgtttggtcta ... acctctgaagGATCTAGATGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACTGGAGTT
EST: gi|34320774|gb|CF373528.1|CF373528
EST:     CGCAGACGATATTATCCGGTTTTCAACGAATATTCAG                         GATCTAGATGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACTGGAGTT
genomic: CGCAGACGACATTATCCGGGTTTCAACGAATATTCAGgtttggtcta ... acctctgaagGATCTAGATGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACTGGAGTT
EST: gi|110372398|gb|EC936560.1|EC936560
EST:     CAAAAGATCTTGGCGCAGACGATATTATCCGGGTTTCAACGAATATTCAG                         GATCTAGATGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACTGGAGTT
genomic: CAAAAGATCTTGGCGCAGACGACATTATCCGGGTTTCAACGAATATTCAGgtttggtcta ... acctctgaagGATCTAGATGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACTGGAGTT
EST: gi|110365933|gb|EC929494.1|EC929494
EST:     CAAAAGATCTTGGCGCAGACGATATTATCCGGGTTTCAACGAATATTCAG                         GATCTAGATGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACTGGAGTT
genomic: CAAAAGATCTTGGCGCAGACGACATTATCCGGGTTTCAACGAATATTCAGgtttggtcta ... acctctgaagGATCTAGATGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACTGGAGTT
EST: gi|110685996|gb|EE063203.1|EE063203
EST:     CAAAAGATCTTGGCGCAGACGATATTATCCGGGTTTCAACGAATATTCAG                         GATCTAGATGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACTGGAGTT
genomic: CAAAAGATCTTGGCGCAGACGACATTATCCGGGTTTCAACGAATATTCAGgtttggtcta ... acctctgaagGATCTAGATGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACTGGAGTT
EST: gi|110408851|gb|EC974498.1|EC974498
EST:     CAAAAGATCTTGGCGCAGACGATATTATCCGGGTTTCAACGAATATTCAG                         GATCTAGATGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACTGGAGTT
genomic: CAAAAGATCTTGGCGCAGACGACATTATCCGGGTTTCAACGAATATTCAGgtttggtcta ... acctctgaagGATCTAGATGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACTGGAGTT
EST: gi|351030108|gb|FQ430850.1|FQ430850
EST:     CAAAAGATCTTGGCGCAGACGACATTATCCGGGTTTCAACGAATATTCAG                         GATCTAGATGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACTGGAGTT
genomic: CAAAAGATCTTGGCGCAGACGACATTATCCGGGTTTCAACGAATATTCAGgtttggtcta ... acctctgaagGATCTAGATGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACTGGAGTT
EST: gi|351013624|gb|FQ429765.1|FQ429765
EST:     CAAAAGATCTTGGCGCAGACGACATTATCCGGGTTTCAACGAATATTCAG                         GATCTAGATGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACTGGAGTT
genomic: CAAAAGATCTTGGCGCAGACGACATTATCCGGGTTTCAACGAATATTCAGgtttggtcta ... acctctgaagGATCTAGATGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACTGGAGTT
EST: gi|110707199|gb|EE083401.1|EE083401
EST:     CAAAAGATCTTGGCGCAGACGATATTATCCGGGTTTCAACGAATATTCAG                         GATCTAGATGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACTGGAGTT
genomic: CAAAAGATCTTGGCGCAGACGACATTATCCGGGTTTCAACGAATATTCAGgtttggtcta ... acctctgaagGATCTAGATGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACTGGAGTT
EST: gi|110421371|gb|EC987667.1|EC987667
EST:     CAAAAGATCTTGGCGCAGACGATATTATCCGGGTTTCAACGAATATTCAG                         GATCTAGATGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACTGGAGTT
genomic: CAAAAGATCTTGGCGCAGACGACATTATCCGGGTTTCAACGAATATTCAGgtttggtcta ... acctctgaagGATCTAGATGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACTGGAGTT
EST: gi|110420392|gb|EC986664.1|EC986664
EST:     CAAAAGATCTTGGCGCAGACGATATTATCCGGGTTTCAACGAATATTCAG                         GATCTAGATGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACTGGAGTT
genomic: CAAAAGATCTTGGCGCAGACGACATTATCCGGGTTTCAACGAATATTCAGgtttggtcta ... acctctgaagGATCTAGATGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACTGGAGTT
EST: gi|110428808|gb|EC995289.1|EC995289
EST:     CAAAAGATCTTGGCGCAGACGATATTATCCGGGTTTCAACGAATATTCAG                         GATCTAGATGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACTGGAGTT
genomic: CAAAAGATCTTGGCGCAGACGACATTATCCGGGTTTCAACGAATATTCAGgtttggtcta ... acctctgaagGATCTAGATGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACTGGAGTT
EST: gi|351013125|gb|FQ424830.1|FQ424830
EST:     CAAAAGATCTTGGCGCAGACGACATTATCCGGGTTTCAACGAATATTCAG                         GATCTAGATGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACTGGAGTT
genomic: CAAAAGATCTTGGCGCAGACGACATTATCCGGGTTTCAACGAATATTCAGgtttggtcta ... acctctgaagGATCTAGATGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACTGGAGTT
EST: gi|110391717|gb|EC956714.1|EC956714
EST:     CAAAAGATCTTGGCGCAGACGATATTATCCGGGTTTCAACGAATATTCAG                         GATCTAGATGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACTGGAGTT
genomic: CAAAAGATCTTGGCGCAGACGACATTATCCGGGTTTCAACGAATATTCAGgtttggtcta ... acctctgaagGATCTAGATGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACTGGAGTT
EST: gi|56409614|gb|CX017866.1|CX017866
EST:     CAAAAGATCTTGGCGCAGACGATATTATCCGGGTTTCAACGAATATTCAG                         GATCTAGATGAAGAAGTGGCGAAAATACAAAGCACAATGGTTACTGGAGTT
genomic: CAAAAGATCTTGGCGCAGACGACATTATCCGGGTTTCAACGAATATTCAGgtttggtcta ... acctctgaagGATCTAGATGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACTGGAGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaagggattccatttctttccatttaacaatactattggttttgacctctgaagGATCTAGATGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACTGGAGTTGATGTGAGCTTTGATTGCGTCGGCTTCAACAAAACCATGTCAACAGCTT
                                        ttttgac  putative branch site (score: 3)
                                              cctct  CT-rich tract
                      atttaacaatactatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtttggtctaactatttccaagtatatttccttcattccaggcctaagcaccaggggtgttgaaccaggagttaccacatatatctagtgccttgaaaatctatcatttggtaagggattccatttctttccatttaacaatactattggttttgacctctgaagGATCTAGATGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACTGGAGTTGATGTGAGCTTTGATTGCGTCGGCTTCAACAAAACCATGTCAACAGCTT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCTT