Sequence
atgc intronic sequence ATGC exonic sequence...accaaagaattttttttgttgcctggagattttactttttgagtactccaataacactaaatgaattatattacttttttttttttaatttctataccagATGTCAAATAGCCGTCCATCAAGAGTGTTATGGGGCAAGAAATGTTCGGGATTTCACTTCATGGGTTTGCAGAGCATGTGAAACACCTGATGTTGAGCGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv16s0098g00350.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA19G17460.1 (Glycine max), 3'ss of exon 3
--accaaagaattt------tttttgttgcctggagattttactttttgagtactccaataacactaaatgaattatattacttttttttttttaatttctataccagATGTCAAATAGCCGTCCATCAAGAGTGTTATGGGGCAAGAAATGTTCGGGATTTCACTTCATGGGTTTGCAGAGCATGTGAAACACCTGATGTTGAGCGG
| || || ||||||||| || | ||| | | | | ||| | | | | | |||| | | || | || ||| || |||||||||||||||| |||||||| |||||||| ||||||||||||| ||||| || ||||||||||| | ||| |||||||||||||| | ||| |
agattgaactatccggcaagtttttgttggttgttgttttcttactcttcat-tttgaatttcgttgca--attaatataagaatgcattatatattttata-----gATGTCAAATAGCCGTTCATCAAGAATGTTATGGAGCAAGAAATGTTCAAGATTTTACGTCATGGGTTTGTAAAGCTTGTGAAACACCTGACATCAAGCAG
upper sequence: Vv16s0098g00350.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA06G13330.1 (Glycine max), 3'ss of exon 12
----accaaagaattttttttgttgc--ctggagattttactttttgagtactcca-ataacactaaatgaattatattacttttttttttttaatttctataccagATGTCAAATAGCCGTCCATCAAGAGTGTTATGGGGCAAGAAATGTTCGGGATTTCACTTCATGGGTTTGCAGAGCATGTGAAACACCTGATGTTGAGCGG
| || || | ||| ||| || || ||| || ||||| | | | | | |||| || || | || || | | | ||||||||||||||| || |||||||| || ||||| ||||||||||| || ||||| || || |||||||| | || |||||||||||||| | |||||
cattgttacagctttgtcattgatgcagatgaagcaagatttttgtggttactctatgttgtattgca---attaaatcacaaataaatt----atatatgttacagATGTCAAATAGCAGTTCATCAAGAATGCTATGGAGCAAGAAATGTCCGAGATTTTACATCTTGGGTTTGTAAGGCTTGTGAAACACCTGACATCAAGCGG
upper sequence: Vv16s0098g00350.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA04G41500.1 (Glycine max), 3'ss of exon 12
----accaaagaattttttttgttgcctg-gagattttactttttgagtactccaataacactaaatgaattatattacttttttttttttaatttctataccagATGTCAAATAGCCGTCCATCAAGAGTGTTATGGGGCAAGAAATGTTCGGGATTTCACTTCATGGGTTTGCAGAGCATGTGAAACACCTGATGTTGAGCGG
| || || | ||| ||| | || | || |||| | || | || || ||||| || || | || || | | | ||||||||||||||| || |||||||| || ||||| ||||||||||| || ||||| || || |||||||| | ||| || |||| |||||| | |||||
caatgttacagctttgtcattgatgcatatgaagctatatttttggggttactctatgttg-tattgcaattaaatcacaaataaatt----atatatgttacagATGTCAAATAGCAGTTCATCAAGAATGCTATGGAGCAAGAAATGTCCGAGATTTTACATCTTGGGTTTGTAAAGCTTGCGAAAGACCTGACATCAAGCGG
upper sequence: Vv16s0098g00350.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: AT5G53430.1 (Arabidopsis thaliana), 3'ss of exon 11
accaaagaattttttttgttgcctggagattttactttttgagtactccaataacactaaatgaattatattacttttttttttttaatttctataccagATGTCAAATAGCCGTCCATCAAGAGTGTTATGGGGCAAGAAATGTTCGGGATTTCACTTCATGGGTTTGCAGAGCATGTGAAACACCTGATGTTGAGCGG
| ||| || | | | | ||| | | | | | ||| ||| | || | || ||| ||||||||||||||| || ||||| || || |||||| | ||||| ||||| || ||||| |||||||| |||| ||| || || |||||||| | | ||
ttgctattattattcagaaaaaaaaaacgagaaaatatctgacttgtgaagcatatttggtatcattgaattttaagtcttctgttccttttctcctcagATGTCAAATAGCAGTTCATCAGGAATGCTATGGGACGAGAAACGTTCGTGACTTCACATCATGGGTCTGCAAAGCCTGCGAGACACCTGAGATCAAACGA
upper sequence: Vv16s0098g00350.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: PP1S47_35V6.1 (Physcomitrella patens), 3'ss of exon 15
accaaagaatttttt---ttgttgcctggagattttactttttgagt--actccaataacactaaatgaattatattacttttttttttttaatttctataccagATGTCAAATAGCCGTCCATCAAGAGTGTTATGGGGCAAGAAATGTTCGGGATTTCACTTCATGGGTTTGCAGAGCATGTGAAACACCTGATGTTGAGCGG
||| || | ||| | | || | | ||| ||||||| | | | | | | || | ||| || | | ||| | || || | |||||||| || | ||||| ||||| | ||| | | |||||||| |||||||| ||||||||||| || |||||||||
----aaggtttagtaggattgatacatgcaaacttttctttttgtttttattggatttttatcgcattt-tctccttagttaaacgtactcgattaatcgtatagGTGCCTGATAGCCGTACACGAGGAGTGCTATGGTGTAAGGGCATCCGAGAGCGTAGGATCATGGGTATGCAGAGCTTGTGAAACACCAGAAGTTGAGCGG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctccaataacactaaatgaattatattacttttttttttttaatttctataccagATGTCAAATAGCCGTCCATCAAGAGTGTTATGGGGCAAGAAATGTTCGGGATTTCACTTCATGGGTTTGCAGAGCATGTGAAACACCTGATGTTGAGCGG
ttactttttttttttt CT-rich tract
taaatgaattatatta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
accaaagaattttttttgttgcctggagattttactttttgagtactccaataacactaaatgaattatattacttttttttttttaatttctataccagATGTCAAATAGCCGTCCATCAAGAGTGTTATGGGGCAAGAAATGTTCGGGATTTCACTTCATGGGTTTGCAGAGCATGTGAAACACCTGATGTTGAGCGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- caaagaa
- - - - - - - - - -tgcctgg
- - - - - - - - - - - - - - - - - - - - - - actccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaatgaa