Sequence
atgc intronic sequence ATGC exonic sequence...ggacaagtctcctaggaaaatttccctagaatgtctagtagatgatgcacttttcctacctccattttcttcacagccaaactttcctgttcttttgcagTCTCTCCACACTGCAGTACAGGGCCCTGACAACTCACCTTTGGAGGTTCAAATAAGGACACAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv16s0039g02260.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA01G43940.1 (Glycine max), 3'ss of exon 2
ggacaagtctcctaggaaaatttccctagaatgtctagtagatgatgcacttttcctacctcc----attttcttcacagccaaactttcctgttctt-ttgcagTCTCTCCACACTGCAGTACAGGGCCCTGACAACTCACCTTTGGAGGTTCAAATAAGGACACAG
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gtttggctttcctgttcatattttcatgaaacaaaattaaaatgatcttgttcttctagtcttgagaattgtgctcgtgattgtattaatgtgtttaaattgcagTCCTTGCACACTGCAGTCCAAGGTCCTGACAACTCACCTTTAGAAGTACAAATAAGGACACAG
upper sequence: Vv16s0039g02260.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA11G01410.1 (Glycine max), 3'ss of exon 2
ggacaagtctcctaggaaaatttccctagaatgtctagt--agatgatgcacttttcctacctcc----attttcttcacagccaaactttcctgttctt-ttgcagTCTCTCCACACTGCAGTACAGGGCCCTGACAACTCACCTTTGGAGGTTCAAATAAGGACACAG
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--gttaggctttccttttcattttttcacaacataaaattaaaatgatcttgttcttctagtcttgagaattgtgcttgtgattgtattaacgtgtttaaattgcagTCCTTGCACACTGCAGTCCAAGGTCCTGACAACTCACCTTTAGAAGTACAAATAAGGACACAG
upper sequence: Vv16s0039g02260.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: PP1S15_331V6.1 (Physcomitrella patens), 3'ss of exon 12
---------------------ggacaagtctcctaggaaaatttccc-tagaatgtcta---gtagatgatgcacttt-tcctacctccattt----tcttcacag-----ccaaacttt---cctgttcttttgcagTCTCTCCACACTGCAGTACAGGGCCCTGACAACTCACCTTTGGAGGTTCAAATAAGGACACAG
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gttaggacaaatatcatttctgtttacatatcttgacaacgcagcgtgcagtgtatttatatacagatatagttgttcatcttatctgtatttgggattctcttggaattttctaatttgtggcgtctatttttgcagTCTTTGCACACTGCAGTACAGGGGCCTGATGGTGCGCCTCTGGAAGTACAAATACGGACAAGGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71866418|gb|DT015473.1|DT015473EST: ATGGTGAATTTGATGATTACATTGTCAATCCAAAGCCTAGTGGCTATCAG TCTCTCCACACTGCAGTACAGGGCCCTGACAACTCACCTTTGGAGGTTCAA
genomic: ATGGTGAATTTGATGATTACATTGTCAATCCAAAGCCTAGTGGCTATCAGgttaaaaatt ... tcttttgcagTCTCTCCACACTGCAGTACAGGGCCCTGACAACTCACCTTTGGAGGTTCAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgcacttttcctacctccattttcttcacagccaaactttcctgttcttttgcagTCTCTCCACACTGCAGTACAGGGCCCTGACAACTCACCTTTGGAGGTTCAAATAAGGACACAG
ctttcctgttcttttg CT-rich tract
attttctt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ggacaagtctcctaggaaaatttccctagaatgtctagtagatgatgcacttttcctacctccattttcttcacagccaaactttcctgttcttttgcagTCTCTCCACACTGCAGTACAGGGCCCTGACAACTCACCTTTGGAGGTTCAAATAAGGACACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - -tctccta
- - - - - - - ggaaaat
- - - - - - - - - - - - - - gaatgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccaaact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttcctgt