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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcaagctcttactaccaccaaaagctaaaaatctaagatgagcttatgaccaccataagctcaaaatgtaagatatgcgtgtttatgacgtcaaatccctttttattgtggctgctacagCGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG

Basic information

species Vitis vinifera
transcript Vv16s0022g01770.t01
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0022g01770.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA16G32960.1 (Glycine max), 3'ss of exon 12
gcaagctcttactaccaccaaaagctaaaaatctaagatgagcttatgaccaccataagctcaaaatgtaagatatgcgtgtttatgac-gtcaaatccctttttattgtggctgctacagCGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
                                      |  ||| ||    ||  |||     | || |    |     | | ||| |  | |||    || | |||| |     ||  |||||||||||||||||||||||||||||||||||||||||||||| ||||||
-------------------------------------gtatgct-atattaactttaaatctgagatatgttctgcaaatatgtatcattgacaatgttctgtctattattaactctgtagCGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTGTTGAAG

upper sequence: Vv16s0022g01770.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA09G28100.1 (Glycine max), 3'ss of exon 12
gcaagctcttactaccaccaaaagctaaaaatctaagatgagcttatgaccaccataagctcaaaatgtaagatatgcgtgtttatgacgtcaaatccctttttattgtggctg-ctacagCGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
                                      |  ||| ||    ||   ||       |  || | | |||   | | |  | |  |     || |   | |   |  ||  |||| ||||||||||||||||||||||||||||||||||||||||| ||||||
-------------------------------------gtatgct-atattaacttaaaatctgtgacctatgttctgcaaatatgtatcattgacaatgttctgtctattattaactctagCGGGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTGTTGAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30134221|gb|CB919559.1|CB919559
EST:     CCTTGTTACAAATCCTAAG                         CGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
genomic: CCTTGTTACAAATCCTAAGgcaagctctt ... gctgctacagCGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
EST: gi|29783193|gb|CB349213.2|CB349213
EST:     GCGAGAAAGTTCAGATTGTTGGTGATGATCTCCTTGTTACAAATCCTAAG                         CGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
genomic: GCGAGAAAGTTCAGATTGTTGGTGATGATCTCCTTGTTACAAATCCTAAGgcaagctctt ... gctgctacagCGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
EST: gi|110399162|gb|EC965655.1|EC965655
EST:     TGTTACAAATCCTAAG                         CGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
genomic: TGTTACAAATCCTAAGgcaagctctt ... gctgctacagCGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
EST: gi|71890438|gb|DT039493.1|DT039493
EST:     GCGAGAAAGTTCAGATTGTTGGTGATGATCTCCTTGTTACAAATCCTAAG                         CGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
genomic: GCGAGAAAGTTCAGATTGTTGGTGATGATCTCCTTGTTACAAATCCTAAGgcaagctctt ... gctgctacagCGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
EST: gi|22009325|gb|BQ794359.1|BQ794359
EST:     GCGAGAAAGTTCAGATTGTTGGTGATGATCTCCTTGTTACAAATCCTAAG                         CGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
genomic: GCGAGAAAGTTCAGATTGTTGGTGATGATCTCCTTGTTACAAATCCTAAGgcaagctctt ... gctgctacagCGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
EST: gi|110716823|gb|EE092142.1|EE092142
EST:     GCGAGAAAGTTCAGATTGTTGGTGATGATCTCCTTGTTACAAATCCTAAG                         CGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
genomic: GCGAGAAAGTTCAGATTGTTGGTGATGATCTCCTTGTTACAAATCCTAAGgcaagctctt ... gctgctacagCGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
EST: gi|27586582|gb|CB009277.1|CB009277
EST:     GCGAGAAAGTTCAGATTGTTGGTGATGATCTTCTTGTTACAAATCCTAAG                         CGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
genomic: GCGAGAAAGTTCAGATTGTTGGTGATGATCTCCTTGTTACAAATCCTAAGgcaagctctt ... gctgctacagCGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
EST: gi|28968210|gb|CB347243.1|CB347243
EST:     GCGAGAAAGTTCAGATTGTTGGAGATGATCTCCTTGTTACAAATCCTAAG                         CGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
genomic: GCGAGAAAGTTCAGATTGTTGGTGATGATCTCCTTGTTACAAATCCTAAGgcaagctctt ... gctgctacagCGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
EST: gi|30297237|gb|CB974031.1|CB974031
EST:     GCGAGAAAGTTCAGATTGTTGGTGATGATCTCCTTGTTACAAATCCTAAG                         CGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTTTATTGAAG
genomic: GCGAGAAAGTTCAGATTGTTGGTGATGATCTCCTTGTTACAAATCCTAAGgcaagctctt ... gctgctacagCGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
EST: gi|33408992|gb|CF214619.1|CF214619
EST:     GCGAGAAAGTTCAGATTGTTGGTGATGATCTCCTTGTTACAAATCCTAAG                         CGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
genomic: GCGAGAAAGTTCAGATTGTTGGTGATGATCTCCTTGTTACAAATCCTAAGgcaagctctt ... gctgctacagCGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
EST: gi|37184490|gb|CF603844.1|CF603844
EST:     GCGAGAAAGTTCAGATTGTTGGTGATGATCTCCTTGTTACAAATCCTAAG                         CGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
genomic: GCGAGAAAGTTCAGATTGTTGGTGATGATCTCCTTGTTACAAATCCTAAGgcaagctctt ... gctgctacagCGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
EST: gi|156732544|gb|EV236665.1|EV236665
EST:     GCGAGAATGTTCAGATTGTTGGTGATGATCTCCTTGTTACAAATCCTAAG                         CGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
genomic: GCGAGAAAGTTCAGATTGTTGGTGATGATCTCCTTGTTACAAATCCTAAGgcaagctctt ... gctgctacagCGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
EST: gi|110408001|gb|EC973621.1|EC973621
EST:     CCTTGTTACAAATCCTAAG                         CGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
genomic: CCTTGTTACAAATCCTAAGgcaagctctt ... gctgctacagCGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
EST: gi|71866052|gb|DT015107.1|DT015107
EST:     GCGAGAAAGTTCAGATTGTTGGTGATGATCTCCTTGTTACAAATCCTAAG                         CGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
genomic: GCGAGAAAGTTCAGATTGTTGGTGATGATCTCCTTGTTACAAATCCTAAGgcaagctctt ... gctgctacagCGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
EST: gi|26267083|gb|CA818146.1|CA818146
EST:     GCGAGAAAGTTCAGATTGTTGGTGATGATCTCCTTGTTACAAATCCTAAG                         CGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
genomic: GCGAGAAAGTTCAGATTGTTGGTGATGATCTCCTTGTTACAAATCCTAAGgcaagctctt ... gctgctacagCGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
EST: gi|22008750|gb|BQ793784.1|BQ793784
EST:     GCGAGAAAGTTCAGATTGTTGGTGATGATCTCCTTGTTACAAATCCTAAG                         CGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
genomic: GCGAGAAAGTTCAGATTGTTGGTGATGATCTCCTTGTTACAAATCCTAAGgcaagctctt ... gctgctacagCGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
EST: gi|22010889|gb|BQ795923.1|BQ795923
EST:     GCGAGAAAGTTCAGATTGTTGGTGATGATCTCCTTGTTACAAATCCTAAG                         CGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
genomic: GCGAGAAAGTTCAGATTGTTGGTGATGATCTCCTTGTTACAAATCCTAAGgcaagctctt ... gctgctacagCGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
EST: gi|30297383|gb|CB974177.1|CB974177
EST:     GCGAGAAAGTTCAGATTGTTGGTGATGATCTCCTTGTTACAAATCCTAAG                         CGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
genomic: GCGAGAAAGTTCAGATTGTTGGTGATGATCTCCTTGTTACAAATCCTAAGgcaagctctt ... gctgctacagCGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
EST: gi|30126213|gb|CB911552.1|CB911552
EST:     GCGAGAAAGTTCAGATTGTTGGTGATGATCTTCTTGTTACAAATCCTAAG                         CGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
genomic: GCGAGAAAGTTCAGATTGTTGGTGATGATCTCCTTGTTACAAATCCTAAGgcaagctctt ... gctgctacagCGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
EST: gi|30297814|gb|CB974608.1|CB974608
EST:     GCGAGAAAGTTCAGATTGTTGGTGATGATCTCCTTGTTACAAATCCTAAG                         CGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
genomic: GCGAGAAAGTTCAGATTGTTGGTGATGATCTCCTTGTTACAAATCCTAAGgcaagctctt ... gctgctacagCGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
EST: gi|110720665|gb|EE096796.1|EE096796
EST:     GCGAGAAAGTTCAGATTGTTGGTGATGATCTCCTTGTTACAAATCCTAAG                         CGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
genomic: GCGAGAAAGTTCAGATTGTTGGTGATGATCTCCTTGTTACAAATCCTAAGgcaagctctt ... gctgctacagCGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
EST: gi|161719189|gb|FC069366.1|FC069366
EST:     GCGAGAAAGTTCAGATTGTTGGTGATGATCTCCTTGTTACAAATCCTAAG                         CGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
genomic: GCGAGAAAGTTCAGATTGTTGGTGATGATCTCCTTGTTACAAATCCTAAGgcaagctctt ... gctgctacagCGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
EST: gi|26266435|gb|CA817498.1|CA817498
EST:     GCGAGAAAGTTCAGATTGTTGGTGATGATCTCCTTGTTACAAATCCTAAG                         CGGTGGGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAA
genomic: GCGAGAAAGTTCAGATTGTTGGTGATGATCTCCTTGTTACAAATCCTAAGgcaagctctt ... gctgctacagC-GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAA
EST: gi|110422151|gb|EC988464.1|EC988464
EST:     GCGAGAAAGTTCAGATTGTTGGTGATGATCTCCTTGTTACAAATCCTAAG                         CGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
genomic: GCGAGAAAGTTCAGATTGTTGGTGATGATCTCCTTGTTACAAATCCTAAGgcaagctctt ... gctgctacagCGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
EST: gi|110695109|gb|EE072750.1|EE072750
EST:     GCGAGAAAGTTCAGATTGTTGGTGATGATCTCCTTGTTACAAATCCTAAG                         CGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
genomic: GCGAGAAAGTTCAGATTGTTGGTGATGATCTCCTTGTTACAAATCCTAAGgcaagctctt ... gctgctacagCGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
EST: gi|27585372|gb|CB008067.1|CB008067
EST:     GCGAGAAAGTTCAGATTGTTGGTGATGATCTTCTTGTTACAAATCCTAAG                         CGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
genomic: GCGAGAAAGTTCAGATTGTTGGTGATGATCTCCTTGTTACAAATCCTAAGgcaagctctt ... gctgctacagCGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
EST: gi|34543958|gb|CF512190.1|CF512190
EST:     GCGAGAAAGTTCAGATTGTTGGTGATGATCTCCTTGTTACAAATCCTAAG                         CGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
genomic: GCGAGAAAGTTCAGATTGTTGGTGATGATCTCCTTGTTACAAATCCTAAGgcaagctctt ... gctgctacagCGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
EST: gi|110405512|gb|EC971053.1|EC971053
EST:     GCGAGAAAGTTCAGATTGTTGGTGATGATCTCCTTGTTACAAATCCTAAG                         CGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
genomic: GCGAGAAAGTTCAGATTGTTGGTGATGATCTCCTTGTTACAAATCCTAAGgcaagctctt ... gctgctacagCGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
EST: gi|110700865|gb|EE077893.1|EE077893
EST:     GCGAGAAAGTTCAGATTGTTGGTGATGATCTCCTTGTTACAAATCCTAAG                         CGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
genomic: GCGAGAAAGTTCAGATTGTTGGTGATGATCTCCTTGTTACAAATCCTAAGgcaagctctt ... gctgctacagCGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
EST: gi|34548911|gb|CF517143.1|CF517143
EST:     GCGAGAAAGTTCAGATTGTTGGTGATGATCTCCTTGTTACAAATCCTAAG                         CGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
genomic: GCGAGAAAGTTCAGATTGTTGGTGATGATCTCCTTGTTACAAATCCTAAGgcaagctctt ... gctgctacagCGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
EST: gi|30131875|gb|CB917214.1|CB917214
EST:     CGAGAAAGTTCAGATTGTTGGTGATGATCTTCTTGTTACAAATCCTAAG                         CGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
genomic: CGAGAAAGTTCAGATTGTTGGTGATGATCTCCTTGTTACAAATCCTAAGgcaagctctt ... gctgctacagCGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
EST: gi|27584827|gb|CB007522.1|CB007522
EST:     GCGAGAAAGTTCAGATTGTTGGTGATGATCTTCTTGTTACAA-TCCTAAG                         CGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
genomic: GCGAGAAAGTTCAGATTGTTGGTGATGATCTCCTTGTTACAAATCCTAAGgcaagctctt ... gctgctacagCGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
EST: gi|30301117|gb|CB977911.1|CB977911
EST:     GCGAGAAAGTTCAGATTGTTGGTGATGATCTCCTTGTTACAAATCCTAAG                         CGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
genomic: GCGAGAAAGTTCAGATTGTTGGTGATGATCTCCTTGTTACAAATCCTAAGgcaagctctt ... gctgctacagCGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
EST: gi|110715456|gb|EE093529.1|EE093529
EST:     GCGAGAAAGTTCAGATTGTTGGTGATGATCTCCTTGTTACAAATCCTAAG                         CGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
genomic: GCGAGAAAGTTCAGATTGTTGGTGATGATCTCCTTGTTACAAATCCTAAGgcaagctctt ... gctgctacagCGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
EST: gi|30306141|gb|CB982935.1|CB982935
EST:     GCGAGAAAGTTCAGATTGTTGGTGATGATCTCCTTGTTACAAATCCTAAG                         CGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
genomic: GCGAGAAAGTTCAGATTGTTGGTGATGATCTCCTTGTTACAAATCCTAAGgcaagctctt ... gctgctacagCGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
EST: gi|30297175|gb|CB973969.1|CB973969
EST:     GCGAGAAAGTTCAGATTGTTGGTGATGATCTCCTTGTTACAAATCCTAAG                         CGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
genomic: GCGAGAAAGTTCAGATTGTTGGTGATGATCTCCTTGTTACAAATCCTAAGgcaagctctt ... gctgctacagCGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
EST: gi|30297322|gb|CB974116.1|CB974116
EST:     GCGAGAAAGTTCAGATTGTTGGTGATGATCTCCTTGTTACAAATCCTAAG                         CGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
genomic: GCGAGAAAGTTCAGATTGTTGGTGATGATCTCCTTGTTACAAATCCTAAGgcaagctctt ... gctgctacagCGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
EST: gi|22008176|gb|BQ793210.1|BQ793210
EST:     GGTGATGATCTCCTTGTTACAAACCCTAAG                         CGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
genomic: GGTGATGATCTCCTTGTTACAAATCCTAAGgcaagctctt ... gctgctacagCGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
EST: gi|32246234|gb|CD712053.1|CD712053
EST:     GAAAGTTCAGATTGTTGGTGATGATCTTCTTGTTACAAATCCTAAG                         CGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
genomic: GAAAGTTCAGATTGTTGGTGATGATCTCCTTGTTACAAATCCTAAGgcaagctctt ... gctgctacagCGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
EST: gi|46918466|gb|CN547795.1|CN547795
EST:     GCGAGAAAGTTCAGATTGTTGGTGATGATCTCCTTGTTACAAATCCTAAG                         CGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTTCTATTGAA
genomic: GCGAGAAAGTTCAGATTGTTGGTGATGATCTCCTTGTTACAAATCCTAAGgcaagctctt ... gctgctacagCGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCC-TTCTATTGAA
EST: gi|30251837|gb|CB969570.1|CB969570
EST:     GCGAGAAAGTTCAGATTGTTGGTGATGATCTCCTTGTTACAAATCCTAAG                         CGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
genomic: GCGAGAAAGTTCAGATTGTTGGTGATGATCTCCTTGTTACAAATCCTAAGgcaagctctt ... gctgctacagCGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
EST: gi|30125536|gb|CB910875.1|CB910875
EST:     GCGAGAAAGTTCAGATTGTTGGTGATGATCTTCTTGTTACAAATCCTAAG                         CGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
genomic: GCGAGAAAGTTCAGATTGTTGGTGATGATCTCCTTGTTACAAATCCTAAGgcaagctctt ... gctgctacagCGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
EST: gi|71871681|gb|DT020736.1|DT020736
EST:     GCGAGAAAGTTCAGATTGTTGGTGATGATCTCCTTGTTACAAATCCTAAG                         CGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
genomic: GCGAGAAAGTTCAGATTGTTGGTGATGATCTCCTTGTTACAAATCCTAAGgcaagctctt ... gctgctacagCGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
EST: gi|30300973|gb|CB977767.1|CB977767
EST:     GCGAGAAAGTTCAGATTGTTGGTGATGATCTCCTTGTTACAAATCCTAAG                         CGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTTTATTGAAG
genomic: GCGAGAAAGTTCAGATTGTTGGTGATGATCTCCTTGTTACAAATCCTAAGgcaagctctt ... gctgctacagCGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
EST: gi|71866289|gb|DT015344.1|DT015344
EST:     GCGAGAAAGTTCAGATTGTTGGTGATGATCTCCTTGTTACAAATCCTAAG                         CGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
genomic: GCGAGAAAGTTCAGATTGTTGGTGATGATCTCCTTGTTACAAATCCTAAGgcaagctctt ... gctgctacagCGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
EST: gi|110715384|gb|EE093369.1|EE093369
EST:     GCGAGAAATTTCAGATTGTTGGTGATGATCTCCTTGTTACAAATCCTAAG                         CGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
genomic: GCGAGAAAGTTCAGATTGTTGGTGATGATCTCCTTGTTACAAATCCTAAGgcaagctctt ... gctgctacagCGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
EST: gi|34544046|gb|CF512278.1|CF512278
EST:     GCGAGAAAGTTCAGATTGTTGGTGATGATCTCCTTGTTACAAATCCTAAG                         CGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
genomic: GCGAGAAAGTTCAGATTGTTGGTGATGATCTCCTTGTTACAAATCCTAAGgcaagctctt ... gctgctacagCGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
EST: gi|46918435|gb|CN547764.1|CN547764
EST:     GCGAGAAAGTTCAGATTGTTGGTGATGATCTCCTTGTTACAAATCCTAAG                         CGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
genomic: GCGAGAAAGTTCAGATTGTTGGTGATGATCTCCTTGTTACAAATCCTAAGgcaagctctt ... gctgctacagCGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
EST: gi|29783151|gb|CB349136.2|CB349136
EST:     GCGAGAAAGTTCAGATTGTTGGTGATGATCTCCTTGTTACAAATCCTAAG                         CGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
genomic: GCGAGAAAGTTCAGATTGTTGGTGATGATCTCCTTGTTACAAATCCTAAGgcaagctctt ... gctgctacagCGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
EST: gi|30305158|gb|CB981952.1|CB981952
EST:     GCGAGAAAGTTCAGATTGTTGGTGATGATCTCCTTGTTACAAATCCTAAG                         CGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
genomic: GCGAGAAAGTTCAGATTGTTGGTGATGATCTCCTTGTTACAAATCCTAAGgcaagctctt ... gctgctacagCGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
EST: gi|77586013|gb|DV222103.1|DV222103
EST:     GCGAGAAAGTTCAGATTGTTGGTGATGATCTCCTTGTTACAAATCCTAAG                         CGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
genomic: GCGAGAAAGTTCAGATTGTTGGTGATGATCTCCTTGTTACAAATCCTAAGgcaagctctt ... gctgctacagCGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
EST: gi|110410205|gb|EC975883.1|EC975883
EST:     GCGAGAAAGTTCAGATTGTTGGTGATGATCTCCTTGTTACAAATCCTAAG                         CGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
genomic: GCGAGAAAGTTCAGATTGTTGGTGATGATCTCCTTGTTACAAATCCTAAGgcaagctctt ... gctgctacagCGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
EST: gi|110418381|gb|EC984529.1|EC984529
EST:     GCGAGAAAGTTCAGATTGTTGGTGATGATCTCCTTGTTACAAATCCTAAG                         CGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
genomic: GCGAGAAAGTTCAGATTGTTGGTGATGATCTCCTTGTTACAAATCCTAAGgcaagctctt ... gctgctacagCGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
EST: gi|26265143|gb|CA816206.1|CA816206
EST:     GCGAGAAAGTTCAGATTGTTGGTGATGATCTCCTTGTTACAAATCCTAAG                         CGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
genomic: GCGAGAAAGTTCAGATTGTTGGTGATGATCTCCTTGTTACAAATCCTAAGgcaagctctt ... gctgctacagCGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
EST: gi|110686170|gb|EE063531.1|EE063531
EST:     GCGAGAAAGTTCAGATTGTTGGTGATGATCTCCTTGTTACAAATCCTAAG                         CGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
genomic: GCGAGAAAGTTCAGATTGTTGGTGATGATCTCCTTGTTACAAATCCTAAGgcaagctctt ... gctgctacagCGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
EST: gi|30134791|gb|CB920129.1|CB920129
EST:     CAAATCCTAAG                         CGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
genomic: CAAATCCTAAGgcaagctctt ... gctgctacagCGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
EST: gi|34363639|gb|CF405224.1|CF405224
EST:     GATGATCTCCTTGTTACAAATCCTAAG                         CGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
genomic: GATGATCTCCTTGTTACAAATCCTAAGgcaagctctt ... gctgctacagCGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
EST: gi|71886270|gb|DT035325.1|DT035325
EST:     CCTTGTTACAAATCCTAAG                         CGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
genomic: CCTTGTTACAAATCCTAAGgcaagctctt ... gctgctacagCGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
EST: gi|110358476|gb|EC922715.1|EC922715
EST:     GCGAGAAAGTTCAGATTGTTGGTGATGATCTCCTTGTTACAAATCCTAAG                         CGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
genomic: GCGAGAAAGTTCAGATTGTTGGTGATGATCTCCTTGTTACAAATCCTAAGgcaagctctt ... gctgctacagCGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
EST: gi|83275978|gb|DV939986.1|DV939986
EST:     GCGAGAAAGTTCAGATTGTTGGTGATGATCTCCTTGTTACAAATCCTAAG                         CGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
genomic: GCGAGAAAGTTCAGATTGTTGGTGATGATCTCCTTGTTACAAATCCTAAGgcaagctctt ... gctgctacagCGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
EST: gi|161719251|gb|FC068252.1|FC068252
EST:     GCGAGAAAGTTCAGATTGTTGGTGATGATCTCCTTGTTACAAATCCTAAG                         CGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
genomic: GCGAGAAAGTTCAGATTGTTGGTGATGATCTCCTTGTTACAAATCCTAAGgcaagctctt ... gctgctacagCGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
EST: gi|110377559|gb|EC942632.1|EC942632
EST:     GCGAGAAAGTTCAGATTGTTGGTGATGATCTCCTTGTTACAAATCCTAAG                         CGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
genomic: GCGAGAAAGTTCAGATTGTTGGTGATGATCTCCTTGTTACAAATCCTAAGgcaagctctt ... gctgctacagCGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
EST: gi|110362047|gb|EC925554.1|EC925554
EST:     GCGAGAAAGTTCAGATTGTTGGTGATGATCTCCTTGTTACAAATCCTAAG                         CGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
genomic: GCGAGAAAGTTCAGATTGTTGGTGATGATCTCCTTGTTACAAATCCTAAGgcaagctctt ... gctgctacagCGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
EST: gi|30305842|gb|CB982636.1|CB982636
EST:     GCGAGAAAGTTCAGATTGTTGGTGATGATCTCCTTGTTACAAATCCTAAG                         CGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
genomic: GCGAGAAAGTTCAGATTGTTGGTGATGATCTCCTTGTTACAAATCCTAAGgcaagctctt ... gctgctacagCGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
EST: gi|30125009|gb|CB910348.1|CB910348
EST:     CCTTGTTACAAATCCTAAG                         CGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
genomic: CCTTGTTACAAATCCTAAGgcaagctctt ... gctgctacagCGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgtaagatatgcgtgtttatgacgtcaaatccctttttattgtggctgctacagCGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG
                                  tttttattgt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gcaagctcttactaccaccaaaagctaaaaatctaagatgagcttatgaccaccataagctcaaaatgtaagatatgcgtgtttatgacgtcaaatccctttttattgtggctgctacagCGTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG