Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatattcatctattcgcatttctctcaggagtgatataactcaacctcaacctcttgtaactgtttcatgtgctgtgtgcagACCACAGCTTTCACATTCACTTCCTCAAGTGACGACAGTGTCTGGAACCTGGACGGCGAGCCCTTTCAAGCGCATAAACTCTCAGCACAAGTATTTCGAG

Basic information

species Vitis vinifera
transcript Vv16s0013g01750.t01
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|122690394|gb|EC952153.1|EC952153
EST:     CAAGGAGGGGAGGGAACCCCCTAAACTTTGAATTTGTGGAACACTATAAG                         ACCACAGCTTTCACATTCACTTCCTCAAGTGATGACAGTGTCTGGAACCTG
genomic: CAAGGAGGGGAGGGAACCCCCTAAACTTTGAGTTTGTGGAACACTATAAGgtatatattc ... ctgtgtgcagACCACAGCTTTCACATTCACTTCCTCAAGTGACGACAGTGTCTGGAACCTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggagtgatataactcaacctcaacctcttgtaactgtttcatgtgctgtgtgcagACCACAGCTTTCACATTCACTTCCTCAAGTGACGACAGTGTCTGGAACCTGGACGGCGAGCCCTTTCAAGCGCATAAACTCTCAGCACAAGTATTTCGAG
                           ttgtaac  putative branch site (score: 2)
      atataact  TA-rich tract