1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtaagctaatacaccatttccttataatcctcttctcttaattggtgattcttaccttggtatcacatgtcaaacttgtcacagAGCTGGTACACTCAACTCCTGAACTGCGTCAACGTCTCATTCCTGAGCATGCAAGGAAATAAGTTAATGAGCATGCACTGGTTTCATCTGTAGGCAATAC
species | Vitis vinifera |
transcript | Vv15s0048g02010.t01 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: CTTGCCAAATGGTCGGCCTCTTCCTCCTTTATTCAATTTCACACCTCAAG AGCTGGTACACTCAACTCCTGAACTGCGTCAACGTCTCATTCCTGAGCATGEST: gi|22009072|gb|BQ794106.1|BQ794106
genomic: CTTGCCAAATGGTCGGCCTCTTCCTCCTTTATTCAATTTCACACCTCAAGgtaagctaat ... cttgtcacagAGCTGGTACACTCAACTCCTGAACTGCGTCAACGTCTCATTCCTGAGCATG
EST: CTTGCCAAATGGTCGGCCTCTTCCTCCTTTATTCAATTTCACACCTCAAG AGCTGGTACACTCAACTCCTGAACTGCGTCAACGTCTCATTCCTGAGCATGEST: gi|110382179|gb|EC938698.1|EC938698
genomic: CTTGCCAAATGGTCGGCCTCTTCCTCCTTTATTCAATTTCACACCTCAAGgtaagctaat ... cttgtcacagAGCTGGTACACTCAACTCCTGAACTGCGTCAACGTCTCATTCCTGAGCATG
EST: CTTGCCAAATGGTCGGCCTCTTCCTCCTTTATTCAATTTCACACCTCAAG AGCTGGTACACTCAACTCCTGAACTGCGTCAACGTCTCATTCCTGAGCATGEST: gi|37189535|gb|CF608884.1|CF608884
genomic: CTTGCCAAATGGTCGGCCTCTTCCTCCTTTATTCAATTTCACACCTCAAGgtaagctaat ... cttgtcacagAGCTGGTACACTCAACTCCTGAACTGCGTCAACGTCTCATTCCTGAGCATG
EST: CTTGCCAAATGGTCGGCCTCTTCCTCCTTTATTCAATTTCACACCTCAAG AGCTGGTACACTCAACTCCTGAACTGCGTCAACGTCTCATTCCTGAGCATGEST: gi|110370204|gb|EC929099.1|EC929099
genomic: CTTGCCAAATGGTCGGCCTCTTCCTCCTTTATTCAATTTCACACCTCAAGgtaagctaat ... cttgtcacagAGCTGGTACACTCAACTCCTGAACTGCGTCAACGTCTCATTCCTGAGCATG
EST: CTTGCCAAATGGTCGGCCTCTTCCTCCTTTATTCAATTTCACACCTCAAG AGCTGGTACACTCAACTCCTGAACTGCGTCAACGTCTCATTCCTGAGCATG
genomic: CTTGCCAAATGGTCGGCCTCTTCCTCCTTTATTCAATTTCACACCTCAAGgtaagctaat ... cttgtcacagAGCTGGTACACTCAACTCCTGAACTGCGTCAACGTCTCATTCCTGAGCATG
ctcttctcttaattggtgattcttaccttggtatcacatgtcaaacttgtcacagAGCTGGTACACTCAACTCCTGAACTGCGTCAACGTCTCATTCCTGAGCATGCAAGGAAATAAGTTAATGAGCATGCACTGGTTTCATCTGTAGGCAATAC
ttcttac putative branch site (score: 2)
tcttaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagctaatacaccatttccttataatcctcttctcttaattggtgattcttaccttggtatcacatgtcaaacttgtcacagAGCTGGTACACTCAACTCCTGAACTGCGTCAACGTCTCATTCCTGAGCATGCAAGGAAATAAGTTAATGAGCATGCACTGGTTTCATCTGTAGGCAATAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA