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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcacttgatgaagtgtttttgtagtaatactggtgaaatttcctatgtttcaggaacttaatatatgtttgagtctcataagtggatactttctatttccagGATAAACCTGAAGATAGGGATGCTGAAGCACGGGTAAATGCTGTCAAAGGACTCATATCTGTTTGTGAAACATTAACTCAGGTCAGAGAACATCCTGATA

Basic information

species Vitis vinifera
transcript Vv15s0048g00470.t01
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0048g00470.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA20G24470.1 (Glycine max), 3'ss of exon 13
gtgcacttgatgaagtgtttttgtagta-atactggtgaaatttcctatgtttcaggaacttaa--tatatgtttgagtctcataagtggatactttctatttccagGATAAACCTGAAGATAGGGATGCTGAAGCACGGGTAAATGCTGTCAAAGGACTCATATCTGTTTGTGAAACATTAACTCAGGTCAGAGAACATCCTGATA
                      ||  |  | | ||   ||||    ||| ||  |  | ||||   |  ||| ||| ||  || || ||     || | || | ||||| || |||||||| || |||||||||||||| ||||||||||||||||| |||| ||  || ||||||||||||| | | |  |||||| || ||| ||
----------------------gtgctccacattgc--aaatgctatatattatacaatcttaggttcaatgattgtgttacacaa-tgt---tttcccatgtgcagGAAAACCCTGAAGACAGAGATGCTGAAGCACGAGTAAATGCTGTCAAAGGGCTCACATTAGTGTGTGAAACATTAATTAATGGAAGAGAAGATACTGCTA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttcaggaacttaatatatgtttgagtctcataagtggatactttctatttccagGATAAACCTGAAGATAGGGATGCTGAAGCACGGGTAAATGCTGTCAAAGGACTCATATCTGTTTGTGAAACATTAACTCAGGTCAGAGAACATCCTGATA
        acttaat  putative branch site (score: 4)
                                       tactttctatttcc  putative PPT
       aacttaatatatgttt  TA-rich tract