Sequence
atgc intronic sequence ATGC exonic sequence...tgatggaaagatatgttctgtatggttaacaccaagattatactggtgtagttactgatttctttaatcttgatttcctattgcatgattttgtttccagACAGATGATTTGCAAGATCATATTATCATTTGTGGATTTGGACGTGTTGGACAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv15s0046g03390.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA18G46420.1 (Glycine max), 3'ss of exon 21
tgatggaaagatatgttctgtatggttaacac---caagattatactggtgtagttac-tgatttctttaatcttgatttcctattgcatgattttgtttccagACAGATGATTTGCAAGATCATATTATCATTTGTGGATTTGGACGTGTTGGACAG-
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----acgcagttaacccatatgggtttaccatttgcaattttttattt-tggagtgacatgaaaacttagtagtatacttctttttggttggcatcttttacagaCAGATGATTTGCAAGATCATATCATTATTTGTGGATTTGGACGAGTTGGCCAGG
upper sequence: Vv15s0046g03390.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA09G39770.1 (Glycine max), 3'ss of exon 17
-tgatggaaagatatgttctgtatgg--ttaacaccaagattatactggtgtagttactgatttctttaatcttgatttcctattgcatgattttgtttccagACAGATGATTTGCAAGATCATATTATCATTTGTGGATTTGGACGTGTTGGACAG
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atagtgtacacagctaacccatatgggtttaccgtttgcaattttcttatagacatgaaaatttagtag---tttacttcttttgggttggtatcttttacagACAGATGATCTGCAAGATCATATAATTATTTGTGGATTTGGACGAGTTGGCCAG
upper sequence: Vv15s0046g03390.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA07G08030.1 (Glycine max), 3'ss of exon 13
--tgatggaaagatatgttctgtatggttaacaccaagattatactggtgtagttactgatttctttaatcttgatttcctattgcatgattttgtttccagACAGATGATTTGCAAGATCATATTATCATTTGTGGATTTGGACGTGTTGGACAG
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tgtagttagaccatattgattcagcatttgttatttttttt-tattagatttgacacgtaaaa-ttagttattgactactttttggaggacatcttttacagACAGATGATCTGCAAAATCACATCATAATTTGTGGATTTGGGCGAGTTGGGCAG
upper sequence: Vv15s0046g03390.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: AT1G01790.1 (Arabidopsis thaliana), 3'ss of exon 14
---------------------------------------tgatggaaagatatgttctgtatggt-taacaccaagattatac-tggtgtagttactgatttcttta----atc--ttgat-----ttcctattgcatgattttgtttccagACAGATGATTTGCAAGATCATATTATCATTTGTGGATTTGGACGTGTTGGACAG
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gtaggaatcttaatgattcaaatatagaatttacctctattaggcaataatttatcaatcatggaaccacttgtagctcacacattctctagttgaggaaatcattacaaggccgactgatgagaatttttcttgtctgattttatttgcagACAGATGATTTGCAGGGTCACATAATTATTTGTGGATTTGGTCGAGTTGGTCAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110389557|gb|EC954408.1|EC954408EST: CTCGTTTTGAGCAGCATGATGTGCGAAGTTTGTTACCTGTTGAGAGTGAG ACAGATGATTTGCAAGATCATATTATCATTTGTGGATTTGGACGTGTTGGA
genomic: CTCGTTTTGAGCAGCATGATGTGCGAAGTTTGTTACCTGTTGAGAGTGAGgtaaaattct ... ttgtttccagACAGATGATTTGCAAGATCATATTATCATTTGTGGATTTGGACGTGTTGGA
EST:
gi|34546770|gb|CF515002.1|CF515002EST: CTCGTTTTGAGCAGCATGATGTGCGAAGTTTGTTACCTGTTGAGAGTGAG ACAGATGATTTGCAAGATCATATTATCATTTGTGGATTTGGACGTGTTGGA
genomic: CTCGTTTTGAGCAGCATGATGTGCGAAGTTTGTTACCTGTTGAGAGTGAGgtaaaattct ... ttgtttccagACAGATGATTTGCAAGATCATATTATCATTTGTGGATTTGGACGTGTTGGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtgtagttactgatttctttaatcttgatttcctattgcatgattttgtttccagACAGATGATTTGCAAGATCATATTATCATTTGTGGATTTGGACGTGTTGGACAG
ttttgtttcc CT-rich tract
atttctttaatctt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tgatggaaagatatgttctgtatggttaacaccaagattatactggtgtagttactgatttctttaatcttgatttcctattgcatgattttgtttccagACAGATGATTTGCAAGATCATATTATCATTTGTGGATTTGGACGTGTTGGACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - ggaaaga
- - - - - - - - - tgtatgg
- - - - - - - - - - - - - - acaccaa
- - - - - - - - - - - - - - - - - - - - - ctggtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcatgat