Sequence
atgc intronic sequence ATGC exonic sequencegttaatccatgttccttgtgtttttcttcaaaatatagtggagtggatatgacttcgatttcatgtggacgttgctcatgtgtttttatacactcacacgtttacatggtttgtcttgttgggatacacaacttatgttgcagTTTGAGGTACTGGTTTAGAGCAAAAGGAAAGCTGTCAGATGATCAGGCTTTGCATAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv15s0046g02700.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA18G46620.1 (Glycine max), 3'ss of exon 10
gttaatccatgttccttgtgtttttcttcaaaatatagtggagtggatatgacttcgatttcatgtggacgttgctcatgtgtttttatacactcacacgtttacatggtttgtcttgttgggatacac---aacttatgttgcagTTTGAGGTACTGGTTTAGAGCAAAAGGAAAGCTGTCAGATGATCAGGCTTTGCATAG
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---------------------------------------------cctttgccttactttctctctaaataatttctacagagccttg-acatcttggaatttgaatgctacatattatcttaacttatttaaaatttaaatgcagTTTGAGATACTGGTTTAGAGCAAAGGGAAAACTTTCAGATGATCAGGCCTTGCATAG
upper sequence: Vv15s0046g02700.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA03G01210.1 (Glycine max), 3'ss of exon 12
-------------------------------------------gttaatccatgttccttgtgtttttcttcaaaatatagtggagtggatatgacttcgatttcatgtggacgttgctc---atgtgtttttatacactcacacgtttacatggtttgtcttgttggga---tacacaacttatgtt-gcagTTTGAGGTACTGGTTTAGAGCAAAAGGAAAGCTGTCAGATGATCAGGCTTTGCATAG
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gttagtcagatgttgtgtctgcaatttttcacttacttttattatcagcatttatgcaatgtactgatcagaaagatttggaagggagcatcgccctcctttctcaccaaatcatttttccaaatgtaacctta-atgcctgattttttaaatgctagatattaatttgaacttgtgtaaatactgtttgcagTTTGAGATACTGGTTTAGAGCAAAGGGAAAACTTTCAGATGATGAAGCCTTGCATAG
upper sequence: Vv15s0046g02700.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA18G46610.1 (Glycine max), 3'ss of exon 12
gttaatccatgttccttgtgtttttcttcaaaatatagtggagtggatatgacttcgatttcatgtggacgttgctcat-gtgtttttatacactcacacgtttacatggtttgtcttgttgggatacacaacttatgt-tgcagTTTGAGGTACTGGTTTAGAGCAAAAGGAAAGCTGTCAGATGATCAGGCTTTGCATAG-
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----------------------------------------------ctttgccttactttctctgtaaatcttttctacagagccttaatgtatgggaattttaatggtgtatattatcttgacttaattaaaatttgaatgcagtTTGAGATATTGGTTTAGAGCAAGGGGAAAACTTTCAGATGATGAAGCCTTGCATAGG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tacactcacacgtttacatggtttgtcttgttgggatacacaacttatgttgcagTTTGAGGTACTGGTTTAGAGCAAAAGGAAAGCTGTCAGATGATCAGGCTTTGCATAG
cactcac putative branch site (score: 2)
tttacat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttaatccatgttccttgtgtttttcttcaaaatatagtggagtggatatgacttcgatttcatgtggacgttgctcatgtgtttttatacactcacacgtttacatggtttgtcttgttgggatacacaacttatgttgcagTTTGAGGTACTGGTTTAGAGCAAAAGGAAAGCTGTCAGATGATCAGGCTTTGCATAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG