Sequence
atgc intronic sequence ATGC exonic sequence...cactttgtgtgcacgaactttttagttcaaccttcaaatcttgaggcaaaaaaaggaagaatgctgaatggtctctctacgtatcttatttatcgtgcagAATGACTTGGATTGCATGCAATTGCCTGACACGATCCGCTGGCGTATCCAAGCTGCAATGCCAATTCTTGTCCCTTCTGGCCGGTGTTCCATCTCTTGCC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv15s0046g02510.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA03G01150.1 (Glycine max), 3'ss of exon 11
----------cactttgtg------tgcacgaactttttagtt---caaccttcaaatcttgaggcaaaaaaaggaagaatgctgaat-ggtctctcta------cgtatcttat------ttatc--gtgcagAATGACTTGGATTGCATGCAATTGCCTGACACGATCCGCTGGCGTATCCAAGCTGCAATGCCAATTCTTGTCCCTTCTGGCCGGTGTTCCATCTCTTGCC
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gccatatccgtgcttcataaatctctactgaagctctacaatttggcaatgtttatgttacatatttggcaatctagaaatgttaattcaatcttcctagTCACGCTTGTCTAATGATCTGTTATCCGATGCAGAATGACTTGGATCGTATGCAACTGCCAGACACTATTCGGTGGCGTATCCAAGCTGCAATGCCCATG----------------------------------
upper sequence: Vv15s0046g02510.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA07G07710.1 (Glycine max), 3'ss of exon 8
--cactttgtgtgcacgaactttttagttcaaccttcaaatcttgaggcaaaaaaaggaagaatgctgaatggtctctctacgtatcttatttatcgtgcagAATGACTTGGATTGCATGCAATTGCCTGACACGATCCGCTGGCGTATCCAAGCTGCAATGCCAATTCTTGTCCCTTCTGGCCGGTGTTCCATCTCTTGCC
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aaagctctacaatttggcaatgtttatgtacatatttggcaatctag--aaatattaattcaatcttgtcgcgcttgtctaatgatctgttgtctggtgcagAATGACTTGGATCGTATGCAACTGCCAGACACTATTCGGTGGCATATCCAGGCTGCAATGCCCATACTCATCCCCTCTATGCGGTGCTCTTTATCCTGCC
upper sequence: Vv15s0046g02510.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA09G39550.1 (Glycine max), 3'ss of exon 8
-------------------------------------------------cactttgtgtgcacgaactttttagt-tcaaccttcaaatct---tgaggcaaa---aaaaggaagaatgctgaatg---gtctctctacgtatcttatttatcgtgcagAATGACTTGGATTGCATGCAATTGCCTGACACGATCCGCTGGCGTATCCAAGCTGCAATGCCAATTCTTGTCCCTTCTGGCCGGTGTTCCATCTCTTGCC
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gtatgaatcttttagcctatagcttttagtttgtgacctgatcccatgttattaaatataggaaggcattttattcttgatattatcatctggctgatgctgattagaatgaatgaatgcgggcttcttgcttttcttctggtctattgtataatacagAATCATCTTGATAATATGCAACTGCCAGACACTATCCGGTGGCGTATCCAAGCTGCCATGCCTGTGCTCCCTCCCTCTATACGGTGCTCTTTCTCATGCCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|27583735|gb|CB006430.1|CB006430EST: CTATCAAGGAATTTTCTGGATTTGATCGCGAGGCAGCAGAAAATTTACAG AATGACTTGGATTGCATGCAATTGCCTGACACGATCCGCTGGCGTATCCAA
genomic: CTATCAAGGAATTTTCTGGATTTGATCGCGAGGCAGCAGAAAATTTACAGgttcgattct ... tatcgtgcagAATGACTTGGATTGCATGCAATTGCCTGACACGATCCGCTGGCGTATCCAA
EST:
gi|110700399|gb|EE078395.1|EE078395EST: CTATCAAGGAATTTTCTGGATTTGATCGTGAAGCANTAAAAAATTTACAG AATGACTTGGATTGCATGCAATTGCCTGACACGATCCGCTGGCGTATCCAA
genomic: CTATCAAGGAATTTTCTGGATTTGATCGCGAGGCAGCAGAAAATTTACAGgttcgattct ... tatcgtgcagAATGACTTGGATTGCATGCAATTGCCTGACACGATCCGCTGGCGTATCCAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gcaaaaaaaggaagaatgctgaatggtctctctacgtatcttatttatcgtgcagAATGACTTGGATTGCATGCAATTGCCTGACACGATCCGCTGGCGTATCCAAGCTGCAATGCCAATTCTTGTCCCTTCTGGCCGGTGTTCCATCTCTTGCC
tcttattt CT-rich tract
tatcttatttat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
cactttgtgtgcacgaactttttagttcaaccttcaaatcttgaggcaaaaaaaggaagaatgctgaatggtctctctacgtatcttatttatcgtgcagAATGACTTGGATTGCATGCAATTGCCTGACACGATCCGCTGGCGTATCCAAGCTGCAATGCCAATTCTTGTCCCTTCTGGCCGGTGTTCCATCTCTTGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - gcacgaa
- - - - - - - - - - - - -ttcaacc
- - - - - - - - - - - - - - - - - - - - - - - -aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - ggaagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgaatgg