Sequence
atgc intronic sequence ATGC exonic sequence...tattggatacaagccctagatcttagaaattttattcatgaataaatgctaaagttggttcttctttaccctgtgcataacttgggcaatatgctttcagCTTTGCATGGCTTGAGCTGGTGAGTCACAGGAGTTTCATGCCGAAATTGCTAACAGGAAACCCTTCAAAGGGTTGGCCTTATCTTCATCGGTTGTTGGTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv15s0021g02610.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA07G14770.1 (Glycine max), 3'ss of exon 45
tattggatacaa-gccctagatcttagaaattttattcatgaataaatgctaaagttggt--tcttctttaccctgtgcataacttgggcaatatgctttcagCTTTGCATGGCTTGAGCTGGTGAGTCACAGGAGTTTCATGCCGAAATTGCTAACAGGAAACCCTTCAAAGGGTTGGCCTTATCTTCATCGGTTGTTGGTG
| | | | | | | ||||| | || || | |||| || | ||| | | || | || || | | || ||| | ||||| ||||||||||||||| || | ||||||||||| |||||||| ||| || | || || || | ||| |||||||||||| | || ||||| | ||
-agtctacaaatcactttttatcttgtatatccattt--ttaatacttgttttgtttgatattgttttataaactcggttcctttgtggaaatgtttcttcagTTTTGCATGGCTTGAGTTGATTAGTCACAGGAGCTTCATGCCTAAAATGTTGACTGGTAATGGTCAAAAAGGTTGGCCTTATATCCAAAGGTTGCTTGTA
upper sequence: Vv15s0021g02610.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA03G27260.1 (Glycine max), 3'ss of exon 28
tattggatacaagcc-ctagatcttagaaattttattcatgaataaatgctaaagttggttcttctttaccctgtgcataacttg-ggcaatatgctttcagCTTTGCATGGCTTGAGCTGGTGAGTCACAGGAGTTTCATGCCGAAATTGCTAACAGGAAACCCTTCAAAGGGTTGGCCTTATCTTCATCGGTTGTTGGTG
| ||||| | | | | | | || | | | |||| || | ||| | | |||| | | ||| || ||| | ||||| ||||||||||||||| || | ||||||||||| |||||||| ||| || | || || || | ||| |||||||||||| | || ||||| | ||
--aagtctacaaatcattttttatcatatatatccatttttaatacttgttttgtttgatattgttttataactcggttcctttgtggaaatgtttcttcagTTTTGCATGGCTTGAGTTGATTAGTCACAGGAGCTTCATGCCAAAAATGTTGACTGGTAATGGTCAAAAAGGTTGGCCTTATATCCAAAGGTTGCTTGTA
upper sequence: Vv15s0021g02610.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA03G27270.1 (Glycine max), 3'ss of exon 45
tattggatacaagccctagatcttagaaattttattcatgaataaatgctaaagttggttcttctttaccctgtgcataacttg-ggcaatatgctttcagCTTTGCATGGCTTGAGCTGGTGAGTCACAGGAGTTTCATGCCGAAATTGCTAACAGGAAACCCTTCAAAGGGTTGGCCTTATCTTCATCGGTTGTTGGTG
| | | | | | || | | | | | ||| | |||| || | ||| | | |||| || | ||| || ||| | |||| ||||||||||||||| || | ||||||||||| |||||||| ||| || | || || || | ||| |||||||||||| | || ||||| | ||
aagtctacaaatcacttattaccttgtatatccattttt-aatacttgttttgtttgatattgttttaaaacttggttcctttgtgggaatgtttcatcagTTTTGCATGGCTTGAGTTGATTAGTCACAGGAGCTTCATGCCAAAAATGTTGACTGGTAATGGTCAAAAAGGTTGGCCTTATATCCAAAGGTTGCTTGTAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30302483|gb|CB979277.1|CB979277EST: TTTGCTAATGCATTTCATGCTTTGCAACCCCTCAAAATTCCTGCATTCAG CTTTGCATGGCTTGAGCTGGTGAGTCACAGGAGTTTCATGCCGAAATTGCT
genomic: TTCGCTAATGCATTTCATGCTTTGCAACCCCTCAAAATTCCTGCATTCAGgttagcataa ... atgctttcagCTTTGCATGGCTTGAGCTGGTGAGTCACAGGAGTTTCATGCCGAAATTGCT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atgctaaagttggttcttctttaccctgtgcataacttgggcaatatgctttcagCTTTGCATGGCTTGAGCTGGTGAGTCACAGGAGTTTCATGCCGAAATTGCTAACAGGAAACCCTTCAAAGGGTTGGCCTTATCTTCATCGGTTGTTGGTG
tgctttc CT-rich tract
ttcttta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tattggatacaagccctagatcttagaaattttattcatgaataaatgctaaagttggttcttctttaccctgtgcataacttgggcaatatgctttcagCTTTGCATGGCTTGAGCTGGTGAGTCACAGGAGTTTCATGCCGAAATTGCTAACAGGAAACCCTTCAAAGGGTTGGCCTTATCTTCATCGGTTGTTGGTG
- - - - acaagcc
- - - - - - - - - - - - agaaatt
- - - - - - - - - - - - - - - - - - - -gaataaa