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...aaagggtttagaagctaatgattgaaagaaaggcagaaaaatgagtcattcatcttgacaatttgagcctaaacgatcttgactgatgtcttctttgaagGGAATTCTGCTGGCCAAGCAATTGAACTACTCATTCAGAAAGGAGTTCCAGAATCTCATATAATATTCCTAAACCTCATCTCT
species | Vitis vinifera |
transcript | Vv14s0171g00090.t01 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: GGACATTTCAGAACGGCATGTCCTGCTTCTGGACCCAGTTCTTGCTACAG GGAATTCTGCTGGCCAAGCAATTGAACTACTCATTCAGAAAGGAGTTCCAGEST: gi|22009982|gb|BQ795016.1|BQ795016
genomic: GGACATTTCAGAACGGCATGTCCTGCTTCTGGACCCAGTTCTTGCTACAGgtagctgttt ... ttctttgaagGGAATTCTGCTGGCCAAGCAATTGAACTACTCATTCAGAAAGGAGTTCCAG
EST: GGACATTTCAGAACGGCATGTCCTGCTTCTGGACCCAGTTCTTGCTACAG GGAATTCTGCTGGCCAAGCAATTGAACTACTCATTCAGAAAGGAGTTCCAGEST: gi|110701989|gb|EE080193.1|EE080193
genomic: GGACATTTCAGAACGGCATGTCCTGCTTCTGGACCCAGTTCTTGCTACAGgtagctgttt ... ttctttgaagGGAATTCTGCTGGCCAAGCAATTGAACTACTCATTCAGAAAGGAGTTCCAG
EST: GACATTTCAGAACGGCATGTCCTGCTTCTGAGACC-AGTTCTTGCTACAG GGAATTCTGCTGGCCAAGCAATTGAACTACTCATTCAGAAA
genomic: GACATTTCAGAACGGCATGTCCTGCTTCTG-GACCCAGTTCTTGCTACAGgtagctgttt ... ttctttgaagGGAATTCTGCTGGCCAAGCAATTGAACTACTCATTCAGAAA
tcattcatcttgacaatttgagcctaaacgatcttgactgatgtcttctttgaagGGAATTCTGCTGGCCAAGCAATTGAACTACTCATTCAGAAAGGAGTTCCAGAATCTCATATAATATTCCTAAACCTCATCTCT
gactgat putative branch site (score: 3)
tgtcttcttt CT-rich tract
acaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaagggtttagaagctaatgattgaaagaaaggcagaaaaatgagtcattcatcttgacaatttgagcctaaacgatcttgactgatgtcttctttgaagGGAATTCTGCTGGCCAAGCAATTGAACTACTCATTCAGAAAGGAGTTCCAGAATCTCATATAATATTCCTAAACCTCATCTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - -gctaatg
- - - - - - - - - - - - aaagaaa
- - - - - - - - - - - - - - - - - agaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgactga