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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttgataatatcccaactcctggtttaacgtttcttgactcaggctcctgagcaactactaaattgtatgatcctccattgcagTTCTCAGACTCTGAGACCACATCGACACAGGACTCTGCCCTAATGATCACCAGCACCATTATTGTTGTTCTTTTTAGTACAGTG

Basic information

species Vitis vinifera
transcript Vv14s0128g00020.t01
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32265242|gb|CD716831.1|CD716831
EST:     GGGCAGGCCTAATGAGAGGTGCAGTTACCATTGCTCTGTCCTACAGCGAG                         TTCTCAGACTCTGAGACCACATCGACACAGGACTCTGCCCTAATGATCACC
genomic: GGGCAGGCCTAATGAGAGGTGCAGTTACCATTGCTCTGTCCTACAGCGAGgtaagttgat ... tccattgcagTTCTCAGACTCTGAGACCACATCGACACAGGACTCTGCCCTAATGATCACC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttcttgactcaggctcctgagcaactactaaattgtatgatcctccattgcagTTCTCAGACTCTGAGACCACATCGACACAGGACTCTGCCCTAATGATCACCAGCACCATTATTGTTGTTCTTTTTAGTACAGTG
                           tactaaa  putative branch site (score: 1)
                                          tcctccatt  putative PPT
                              taaattgtat  TA-rich tract