Sequence
atgc intronic sequence ATGC exonic sequence...tttgtaatggagttttttaactgcatgggtgaatggataacttgttggaatcaatactgactgctgaaaccttatagaacctcaaaatctaaatgtgcagGTTAAAGAGGTGATCATTTCATTCTTCATATTGATGGAACAGGGTAAAGCTACAAGACAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0068g01000.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA16G05180.1 (Glycine max), 3'ss of exon 12
tttgtaatggagtt--ttttaactgcatgggtgaatggataacttgttggaatcaatactgactgctgaaaccttatagaacctcaaaatctaaatgtgcagGTTAAAGAGGTGATCATTTCATTCTTCATATTGATGGAACAGGGTAAAGCTACAAGACAG
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ctactaccagttttggctcacatttcatttttaagtatgtaactattcaccagccgaac--attttctaatggctaccaatctttaactctttaatgtgtagGTCAAAGAGGTTATAATTTCATTCTTTATTCTGATGGAACAGGGCAAAGCTACAAGACAG
upper sequence: Vv14s0068g01000.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA02G07370.1 (Glycine max), 3'ss of exon 12
tttgtaatggagttttttaactgcatgggtgaatggataacttgttggaatcaat--actgactgctgaaaccttatagaacctcaaaatctaaatgtgcagGTTAAAGAGGTGATCATTTCATTCTTCATATTGATGGAACAGGGTAAAGCTACAAGACAG
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-agctgccaccccttttaagttttaggccagattttgctgtatgtagctatgcaccagccaaacatctaaaagtcacactacc-caaactcttaatgtgcagGTTAAAGAGGTAATAATATCATTTTTCATTCTGATGGAGCAGGGAAAAGCTAATAGACAA
upper sequence: Vv14s0068g01000.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA16G26360.1 (Glycine max), 3'ss of exon 12
tttgtaatggagttttttaactgcatgggtgaatggataacttgttg----gaatcaatactgactgctgaaaccttatagaacctcaaaatctaaatgtgcagGTTAAAGAGGTGATCATTTCATTCTTCATATTGATGGAACAGGGTAAAGCTACAAGACAG
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----tgctacacgttttaagttttaggccagattttgctgtatgtagctatgcaccagccaaaacatctaaaagtcacattaatcttaaattcttaatgtgcagGTTAAAGAGGTAATAATATCATTTTTCATTCTGATGGAGCAGGGAAAAGCTAATAGACAA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tggaatcaatactgactgctgaaaccttatagaacctcaaaatctaaatgtgcagGTTAAAGAGGTGATCATTTCATTCTTCATATTGATGGAACAGGGTAAAGCTACAAGACAG
aaaatctaaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tttgtaatggagttttttaactgcatgggtgaatggataacttgttggaatcaatactgactgctgaaaccttatagaacctcaaaatctaaatgtgcagGTTAAAGAGGTGATCATTTCATTCTTCATATTGATGGAACAGGGTAAAGCTACAAGACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - gcatggg
- - - - - - - - - - - - - - -tgaatgg
- - - - - - - - - - - - - - - - - - - - cttgttg
- - - - - - - - - - - - - - - - - - - - - - - -gaatcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -actgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctcaaa