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...tattattgtatttttcatatgatgtatattcatttttatgcaaaattaaatgtttctcacttgtgattttcaagttttgtcacattggtatttgttgcagGCTTATCACGCCATCAGAAGATGCACAAACTCAAGACCCGAGATCGCGTATGCAAGCAATGCTAATGAAGGCTACAGAAGCGATAGTCAAGGCAAAG
species | Vitis vinifera |
transcript | Vv14s0068g00780.t01 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: TCAACTTTAGCATCCATCACATCTTCAAGCGCTCCCACTGATACGGACGG GCTTATCACGCCATCAGAAGATGCACAAACTCAAGACCCGAGATCGCGTATEST: gi|351030030|gb|FQ430772.1|FQ430772
genomic: TCAACTTTAGCATCCATCACATCTTCAAGCACTCCCACTGATACGGACAGgtaaataata ... tttgttgcagGCTTATCACGCCATCAGAAGATGCACAAACTCAAGACCCGAGATCGCGTAT
EST: CAACTTTAGCATCCATCACAATCT-CAAGCACTCCCACTGATACGGACAG GGCT-ATCACGCCAEST: gi|22008856|gb|BQ793890.1|BQ793890
genomic: CAACTTTAGCATCCATCACA-TCTTCAAGCACTCCCACTGATACGGACAGgtaaataata ... tttgttgcagG-CTTATCACGCCA
EST: TCAACTTTAGCATCCATCACATCTACAAGCACTCCCACTGATACGGACAG GCTTATCACGCCATCAGAAGATGCACAAACTCAAGACCCAAGATCGCGTAT
genomic: TCAACTTTAGCATCCATCACATCTTCAAGCACTCCCACTGATACGGACAGgtaaataata ... tttgttgcagGCTTATCACGCCATCAGAAGATGCACAAACTCAAGACCCGAGATCGCGTAT
ttaaatgtttctcacttgtgattttcaagttttgtcacattggtatttgttgcagGCTTATCACGCCATCAGAAGATGCACAAACTCAAGACCCGAGATCGCGTATGCAAGCAATGCTAATGAAGGCTACAGAAGCGATAGTCAAGGCAAAG
ttctcac putative branch site (score: 2)
attttcaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tattattgtatttttcatatgatgtatattcatttttatgcaaaattaaatgtttctcacttgtgattttcaagttttgtcacattggtatttgttgcagGCTTATCACGCCATCAGAAGATGCACAAACTCAAGACCCGAGATCGCGTATGCAAGCAATGCTAATGAAGGCTACAGAAGCGATAGTCAAGGCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - -ttatgca
- - - - - - - - - - - - - - - - - - - - - aaattaa