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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagatctatgtcatcccatttctttacttaaattaagatgtaacctttctctcccagcttagttgtgttttatttgggcagTGGTGATAGGACTCCCAAACAGAAGGTGAAATTGAAAGTCACAGAGGAGAAGCTATTGAATTTGATGTTAAAATACAATGGGGGGAGGCCTAGATCTGAG

Basic information

species Vitis vinifera
transcript Vv14s0066g02540.t01
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0066g02540.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: LOC_Os03g48300.1 (Oryza sativa), 3'ss of exon 12
gtaagatctatgtcatcccatttcttta--cttaaattaagatgtaacctttctctcccagcttagttgtgttttatttgggcagTGGTGATAGGACTCCCAAACAGAAGGTGAAATTGAAAGTCACAGAGGAGAAGCTATTGAATTTGATGTTAAAATACAATGGGGGGAGGCCTAGATCTGAG
|||||   ||   | ||     |  |||  ||   ||| |    |||   ||        |  | |   | |  ||| ||   ||||| ||| |||| || || ||||| |||||||||||||| || ||||| || ||  ||||||||||||| ||||||||||| || | ||| ||| |||||
gtaaggattactgcctctatgctggttaagctggtattgaatgataaatattggtgttgtgtcttgacatctaatatctgtttagTGGCGATCGGACACCAAAGCAGAAAGTGAAATTGAAAGTTACTGAGGAAAAACTCCTGAATTTGATGTTGAAATACAATGGTGGAAAGCCAAGAGCTGAG

upper sequence: Vv14s0066g02540.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA13G05060.1 (Glycine max), 3'ss of exon 13
gtaagatctatgtcatcccatttctttacttaaattaagatgtaacctttctctcccagcttagttgtgttttatttgggcagTGGTGATAGGACTCCCAAACAGAAGGTGAAATTGAAAGTCACAGAGGAGAAGCTATTGAATTTGATGTTAAAATACAATGGGGGGAGGCCTAGATCTGAG
      | | |   || || ||| |||| ||   |  || |  |    || | ||| |      |  | || | ||| |||||||||||||| ||||| ||||||||||||||  | ||  | || ||||| |||||  |||| || ||||| ||||||||||| ||  ||||||||||||||
-----gtatgttctattccctttttttatttggtt--agttaaatgtgttgtttcctat----atactcttctcttttggcagTGGTGATAGAACTCCAAAACAGAAGGTGAAGCTAAAGATTACTGAGGAAAAGCTGCTGAACTTAATGTTGAAATACAATGGTGGCCGGCCTAGATCTGAG

upper sequence: Vv14s0066g02540.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA19G02260.1 (Glycine max), 3'ss of exon 10
gtaagatctatgtcatcccatttctttacttaaattaagatgtaacctttctctcccagcttagttgtgttttatttgggcagTGGTGATAGGACTCCCAAACAGAAGGTGAAATTGAAAGTCACAGAGGAGAAGCTATTGAATTTGATGTTAAAATACAATGGGGGGAGGCCTAGATCTGAG
||| | |||||  | |    ||| ||||  |   ||   |   ||  | |   ||||    || |    || | ||| |||||||||||||| ||||| ||||||||||||||  | || || || ||||| |||||  |||| || ||||| ||||||||||| ||  |||| |||||||||
gtatgttctattccctt---tttttttatctggtttgtta---aatgtcttgttccctatatactc---ttctcttttggcagTGGTGATAGAACTCCAAAACAGAAGGTGAAGCTAAAGGTTACTGAGGAAAAGCTGCTGAACTTAATGTTGAAATACAATGGTGGCCGGCCGAGATCTGAG

upper sequence: Vv14s0066g02540.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA18G49000.1 (Glycine max), 3'ss of exon 12
gtaagatctatgt-catcccatttctttacttaaattaagatgtaacctttctctcccagcttagttgtgttttatttgggcagTGGTGATAGGACTCCCAAACAGAAGGTGAAATTGAAAGTCACAGAGGAGAAGCTATTGAATTTGATGTTAAAATACAATGGGGGGAGGCCTAGATCTGAG
        ||||| | |  |  || || ||||||||||       | |||  |||  |   ||| |    | || ||| |||||||||||||| ||||||||||||||||||||  | ||||| || ||||| |||||  | ||  | ||||| ||||||||||| ||  | |||||| |||||
-------gtatgttcttttccctttttaacttaaattagttaagcatcttgttcttgccatttactc---tcttgtttcggcagTGGTGATAGAACTCCCAAACAGAAGGTGAAGCTAAAAGTTACTGAGGAAAAGCTGCTAAACCTAATGTTGAAATACAATGGAGGCCGACCTAGAGCTGAG

upper sequence: Vv14s0066g02540.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA09G37610.1 (Glycine max), 3'ss of exon 10
gtaagatctatgt-catcccatttctttacttaaattaagatgtaacctttctctcccagcttagttgtgttttatttgggcagTGGTGATAGGACTCCCAAACAGAAGGTGAAATTGAAAGTCACAGAGGAGAAGCTATTGAATTTGATGTTAAAATACAATGGGGGGAGGCCTAGATCTGAG
        ||||| | |  | ||| || ||||||||||   |  | | | |   ||   |||   |  | || | ||| |||||||||||||| ||||||||||||||||||||  | ||||| || ||||| || ||  | ||  | ||||| ||||||||||| ||  | |||||| |||||
-------gtatgttcttttccttttttaacttaaattag--ttaagcatcttgttctttgctatttactcttctgttttggcagTGGTGATAGAACTCCCAAACAGAAGGTGAAGCTAAAAGTTACTGAGGAAAAACTGCTAAACCTAATGTTGAAATACAATGGAGGCCGACCTAGAGCTGAG

upper sequence: Vv14s0066g02540.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: AT5G15070.2 (Arabidopsis thaliana), 3'ss of exon 13
gtaagatcta---tgtcatcccatttctttacttaaattaaga-tgtaacctttctctcccagcttagttgtgttttatttgggcagTGGTGATAGGACTCCCAAACAGAAGGTGAAATTGAAAGTCACAGAGGAGAAGCTATTGAATTTGATGTTAAAATACAATGGGGGGAGGCCTAGATCTGAG
||| | | ||   | | ||| | | || |  ||||| |      |||   |     | |  || |  ||| | | || | | | |||||||||||| || ||||| ||||| |||||| | ||||| ||||||||||| || || ||  ||||||| || |||||||| || |  || ||| |||||
gtatgttttagcatatgatcacctgtcctctcttaactcctctctgttcacccaggccctgagttctgtt-tatcttctcttgacagTGGTGATAGAACCCCCAAGCAGAAAGTGAAACTAAAAGTTACAGAGGAGAAACTGTTAAACCTGATGTTGAAGTACAATGGAGGAAAACCAAGAGCTGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttaaattaagatgtaacctttctctcccagcttagttgtgttttatttgggcagTGGTGATAGGACTCCCAAACAGAAGGTGAAATTGAAAGTCACAGAGGAGAAGCTATTGAATTTGATGTTAAAATACAATGGGGGGAGGCCTAGATCTGAG
           atgtaac  putative branch site (score: 3)
                                         ttttattt  putative PPT
                                       tgttttattt  TA-rich tract