Sequence
atgc intronic sequence ATGC exonic sequencegtgaaagggagttttcatgagtgttttttgtttaaattgtaaatccttcttttttcctttttacgttctctaagtgaaagaaatgaaacagGTCTGGGATATGAACGGGAGGAAACTATTTAATTTTGAAGGTCATGAGGCTCCAGTATATTCTATATGTCCCCATCACAAGGAGAGCATTCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0060g01680.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GRMZM2G316967_T01 (Zea mays), 3'ss of exon 12
gtgaaagggagttttcatgag-tgttttttgtttaaattgtaaatccttcttttttcctt-tttacgttctctaagtgaaagaaatgaaac-agGTCTGGGATATGAACGGGAGGAAACTATTTAATTTTGAAGGTCATGAGGCTCCAGTATATTCTATATGTCCCCATCACAAGGAGAGCATTCAG
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--------------gtatgagatgtgacttgtatggaaaattaataaactgttttacttggcttatctccttgaacttcattttttttatttagGTATGGGATATGCATGGACATAAATTATTCACATTTGAAGGGCATGAGGCACCTGTGTATTCTATATGTCCGCATCACAAAGAGAGTATTCAG
upper sequence: Vv14s0060g01680.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA19G41840.2 (Glycine max), 3'ss of exon 12
gtgaaagggagttttcatgagtgttttttgtttaaattgtaaatccttctt--ttttcctttttacgttctctaagtgaaagaaatgaaacagGTCTGGGATATGAACGGGAGGAAACTATTTAATTTTGAAGGTCATGAGGCTCCAGTATATTCTATATGTCCCCATCACAAGGAGAGCATTCAG
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------------gtgcacaaat-ctacttattgtgattttggattatgcataaatagtatatctatttaatctgaagaagaaactcttaatagGTCTGGGATTTAACTGGACGGAAACTATTTAACTTTGAGGGGCATGAGGCACCTGTATATTCTATCTGTCCTCATCACAAAGAGAGCATTCAG
upper sequence: Vv14s0060g01680.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA03G39290.1 (Glycine max), 3'ss of exon 13
gtgaaagggagttttcatgagtgttttttgtttaaattgtaaatccttcttttttcctttttacgttctctaagtgaaagaaatgaaacagGTCTGGGATATGAACGGGAGGAAACTATTTAATTTTGAAGGTCATGAGGCTCCAGTATATTCTATATGTCCCCATCACAAGGAGAGCATTCAG
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----------------gtgcataaatctacttgtgattttggattatgcgtaaatggtatatctattttgtctg-aagaaactcttaatagGTGTGGGATATAGCTGGACGGAAACTATTTAACTTTGAGGGGCATGAGGCAGCTGTATATTCTATCTGTCCTCATCACAAGGAGAGCATTCAG
upper sequence: Vv14s0060g01680.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: PP1S99_260V6.1 (Physcomitrella patens), 3'ss of exon 12
------------------------------------------------------------------------------gtgaaagggagttttcatgagtgttttttgtttaaattgtaaatccttcttttttcctttttacgttctctaagtgaaagaaatgaaacagGTCTGGGATAT---GAACGGGAGGAAACTATTTAATTTTGAAGGTCATGAGGCTCCAGTATATTCTATATGTCCCCATCACAAGGAGAGCATTCAG
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gtgcgcacttcattactacgtgcactacttcttaatttggaccatttccagtatgccaaaccatgcctgtgtatttgggttatttctacatatggtgagagagaccaaattttattctagataattgtatctggaatttgactttggacgaacttgt-acatccttcagGTTTGGGATGCTGCAACAGGGCGGAAGCAGTATACTTTTGAAGGTCATGAAGCACCCGTGTACTCTGTTTGTCCACACCACAAGGAGAGCATTCAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttgtaaatccttcttttttcctttttacgttctctaagtgaaagaaatgaaacagGTCTGGGATATGAACGGGAGGAAACTATTTAATTTTGAAGGTCATGAGGCTCCAGTATATTCTATATGTCCCCATCACAAGGAGAGCATTCAG
ttttttccttttta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgaaagggagttttcatgagtgttttttgtttaaattgtaaatccttcttttttcctttttacgttctctaagtgaaagaaatgaaacagGTCTGGGATATGAACGGGAGGAAACTATTTAATTTTGAAGGTCATGAGGCTCCAGTATATTCTATATGTCCCCATCACAAGGAGAGCATTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA