1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...ccatgaatgctgaaattgtaaatatgaatttgggattttattccagaaacagattttgaactaaaaaacttgtgatcatattgttatcaatattttgcagGCGCTTCTGCAGAGGACATTGGCTGACTATGTAAAAGTTGGATTTGCTCCACAGTCAAGCAGCTTGGAGATTCGATTGGTTCAGAGCCAGGATGACATTC
species | Vitis vinifera |
transcript | Vv14s0006g01660.t01 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: ATCCTGACAATCTTAACAAAGCAGCAGAGCTTGCAGTATCAAGCTTGCAG GCGCTTCTGCAGAGGACATTGGCTGACTATGTAAAAGCTGGATTTGCTCCAEST: gi|110414186|gb|EC980012.1|EC980012
genomic: ATCCTGACAATCTTGACAAAGCAGCAGAGCTGGCAGTATCAAGCTTGCAGgtattccttt ... tattttgcagGCGCTTCTGCAGAGGACATTGGCTGACTATGTAAAAGTTGGATTTGCTCCA
EST: ATCCTGACAATCTTAACAAAGCAGCAGAGCTTGCAGTATCAAGCTTGCAG GCGCTTCTGCAGAGGACATTGGCTGACTATGTAAAAGCTGGATTTGCTCCAEST: gi|46918151|gb|CN547480.1|CN547480
genomic: ATCCTGACAATCTTGACAAAGCAGCAGAGCTGGCAGTATCAAGCTTGCAGgtattccttt ... tattttgcagGCGCTTCTGCAGAGGACATTGGCTGACTATGTAAAAGTTGGATTTGCTCCA
EST: ATCCTGACAATCTTGACAAAGCAGCAGAGCTGGCAGTATCAAGCTTGCAG GCGCTTCTGCAGAGGACATTGGCTGACTATGTAAAAGTTGGATTTGCTCCA
genomic: ATCCTGACAATCTTGACAAAGCAGCAGAGCTGGCAGTATCAAGCTTGCAGgtattccttt ... tattttgcagGCGCTTCTGCAGAGGACATTGGCTGACTATGTAAAAGTTGGATTTGCTCCA
gaaacagattttgaactaaaaaacttgtgatcatattgttatcaatattttgcagGCGCTTCTGCAGAGGACATTGGCTGACTATGTAAAAGTTGGATTTGCTCCACAGTCAAGCAGCTTGGAGATTCGATTGGTTCAGAGCCAGGATGACATTC
aactaaa putative branch site (score: 2)
atcatattgttatcaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccatgaatgctgaaattgtaaatatgaatttgggattttattccagaaacagattttgaactaaaaaacttgtgatcatattgttatcaatattttgcagGCGCTTCTGCAGAGGACATTGGCTGACTATGTAAAAGTTGGATTTGCTCCACAGTCAAGCAGCTTGGAGATTCGATTGGTTCAGAGCCAGGATGACATTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
ccatgaa
- - - -tgctgaa
- - - - - - - - - -aaatatga
- - - - - - - - - - - - - - - - - - - - - -cagaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -taaaaaa