1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
...attaatgcaaatcttatgcatcatactagtccgtaatttctagtgcagctatagccactcgaggcagcatatggagcactaatatctgcttttttgcaagGTTGAGGATCCAGATGACATTGAAATTGTAAAGGCCAGTGTTAGTAGTGGTTCAGATATCAAGAAGGAAAAGCCACAACAGCAAGAATCTAGAAATGAAG
species | Vitis vinifera |
transcript | Vv13s0074g00150.t01 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: CACCTGAAGGTTCTAAGGATGTGGCTGTGGGACAACCCATTGCAATAACA GTTGAGGATCCAGATGACATTGAAATTGTAAAGGCCAGTGTTAGTAGTGGTEST: gi|351040802|gb|FQ438346.1|FQ438346
genomic: CACCTGAAGGTTCTAAGGATGTGGCTGTGGGACAACCCATTGCAATAACAgtgagttgga ... tttttgcaagGTTGAGGATCCAGATGACATTGAAATTGTAAAGGCCAGTGTTAGTAGTGGT
EST: CACCTGAAGGTTCTAAGGATGTGGCTGTGGGACAACCCATTGCAATAACA GTTGAGGATCCAGATGACATTGAAATTGTAAAGGCCAGTGTTAGTAGTGGTEST: gi|349832802|gb|FQ422896.1|FQ422896
genomic: CACCTGAAGGTTCTAAGGATGTGGCTGTGGGACAACCCATTGCAATAACAgtgagttgga ... tttttgcaagGTTGAGGATCCAGATGACATTGAAATTGTAAAGGCCAGTGTTAGTAGTGGT
EST: CACCTGAAGGTTCTAAGGATGTGGCTGTGGGACAACCCATTGCAATAACA GTTGAGGATCCAGATGACATTGAAATTGTAAAGGCCAGTGTTAGTAGTGGTEST: gi|294966249|gb|GW839472.1|GW839472
genomic: CACCTGAAGGTTCTAAGGATGTGGCTGTGGGACAACCCATTGCAATAACAgtgagttgga ... tttttgcaagGTTGAGGATCCAGATGACATTGAAATTGTAAAGGCCAGTGTTAGTAGTGGT
EST: CACCTGAAGGTTCTAAGGATGTGGCTGTGGGACAACCCATTGCAATAACA GTTGAGGATCCAGATGACATTGAAATTGTAAAGGCCAGCGTTAGTAGTGGTEST: gi|351015706|gb|FQ427191.1|FQ427191
genomic: CACCTGAAGGTTCTAAGGATGTGGCTGTGGGACAACCCATTGCAATAACAgtgagttgga ... tttttgcaagGTTGAGGATCCAGATGACATTGAAATTGTAAAGGCCAGTGTTAGTAGTGGT
EST: CACCTGAAGGTTCTAAGGATGTGGCTGTGGGACAACCCATTGCAATAACA ATTGAGGATCCAGATGACATTGAAATTGTAAAGGCCAGTGTTAGTAGTGGT
genomic: CACCTGAAGGTTCTAAGGATGTGGCTGTGGGACAACCCATTGCAATAACAgtgagttgga ... tttttgcaagGTTGAGGATCCAGATGACATTGAAATTGTAAAGGCCAGTGTTAGTAGTGGT
cagctatagccactcgaggcagcatatggagcactaatatctgcttttttgcaagGTTGAGGATCCAGATGACATTGAAATTGTAAAGGCCAGTGTTAGTAGTGGTTCAGATATCAAGAAGGAAAAGCCACAACAGCAAGAATCTAGAAATGAAG
cactaat putative branch site (score: 2)
tctgctttttt CT-rich tract
actaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attaatgcaaatcttatgcatcatactagtccgtaatttctagtgcagctatagccactcgaggcagcatatggagcactaatatctgcttttttgcaagGTTGAGGATCCAGATGACATTGAAATTGTAAAGGCCAGTGTTAGTAGTGGTTCAGATATCAAGAAGGAAAAGCCACAACAGCAAGAATCTAGAAATGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- -aatgcaa
- - - - - - cttatgc
- - - - - - - - - - - - - - - - - - - - - -tgcagct
- - - - - - - - - - - - - - - - - - - - - - - - - - -gccactc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcatatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcactaa