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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaccagctctttcaaagaagtagctactatttcataccttgagatagagttttcatgttcaagagaaattttctcttaatcttgcattatttatcttcttttcttttttagtctgggtttatctgtaacaaatatgcttaccatgtcaatttttgttacaaatcagGTGTATGTTGCATAACTTTGGTGGAAATATTGAAATGTATGGCATATTAGATGCAGTTTCTTCTGGTCCAGTTGATGCTCGCATCAGTAAAAATTCAACC

Basic information

species Vitis vinifera
transcript Vv13s0064g00370.t01
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0064g00370.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GRMZM2G033592_T01 (Zea mays), 3'ss of exon 12
gtaaccagctctttcaaagaagtagctactatttcataccttgagatagagttttcatgttcaagagaaatttt-ctcttaatcttgcattatttatcttcttttcttttttagtctgggtttatctgtaacaaatatgcttaccatgtcaatttttgttacaaatcagGTGTATGTTGCATAACTTTGGTGGAAATATTGAAATGTATGGCATATTAGATGCAGTTTCTTCTGGTCCAGTTGATGCTCGCATCAGTAAAAATTCAACC
                             ||| ||||   || | |     |    |   ||  |  |       |  ||| | ||| ||| |   | ||  |||    | |        ||  |   |  |||  ||  ||||  ||  |  |||  |  |||   ||||| ||||| || ||||||||||| || |||||||||||||||||| | ||| || |||| ||||| ||  ||||||| || |  ||| | |||||||| 
----------------------------gtatgtcatcttttaacaaccgctccctaccatcctgtaattccagaccattatttttgtattctcattgttactttaaaatatgaatataattcctgattttcaaccatatttac--tgatagatttgct--caatctagGTGCATGTTACACAACTTTGGTGGGAACATTGAAATGTATGGCATACTTGATTCAATTTCATCTGGCCCCATTGATGCCCGTACAAGTTACAATTCAACA

upper sequence: Vv13s0064g00370.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA10G11720.2 (Glycine max), 3'ss of exon 12
gtaaccagctctttcaaagaagtagctactatttcataccttgagatagagttttcatgttcaagagaaattttctcttaatcttgcattatttatcttcttttcttttttagtctgggtttatctgtaacaaatatgcttaccatgtcaatttttgttacaaatcagGTGTATGTTGCATAACTTTGGTGGAAATATTGAAATGTATGGCATATTAGATGCAGTTTCTTCTGGTCCAGTTGATGCTCGCATCAGTAAAAATTCAACC
                                                                  | ||||  | |||  | | ||  |  |||     || | |     | |       |||    || || ||||| | |    ||||| ||  || |   ||||||| ||| | |||||||||||||| |||||||||||||||||||   | ||| || ||||||| || || |||||||||||  |||||  ||| ||||| 
------------------------------------------------------------------gtaattaacactttgt-tagctcttgttactaaattctataaagaaatacaa---tattctaaagaattatgcattc----tcaatcttacttgct--tcagGTGCATGCTACATAACTTTGGTGGCAATATTGAAATGTATGGCACTCTGGATTCAATTTCTTCAGGGCCTGTTGATGCTCGTGTCAGTGCAAACTCAACA

upper sequence: Vv13s0064g00370.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: EFJ21415 (Selaginella moellendorffii), 3'ss of exon 12
gtaaccagctctttcaaagaagtagctactatttcataccttgagatagagttttcatgttcaagagaaattttctcttaatcttgcattatttatcttcttttcttttttagtctgggtttatctgtaacaaatatgcttaccatgtcaatttttgttacaaatcagGTGTATGTTGCATAACTTTGGTGGAAATATTGAAATGTATGGCATATTAGATGCAGTTTCTTCTGGTCCAGTTGATGCTCGCATCAGTAAAAATTCAACC
                                                                                                             | ||| |  |  | ||| |  |   |  |  | |  | | |     |  |      |||||||||||||||||| ||||||||||||   ||||||||||| |   | |||| ||| ||||| |||||||||||||||   |  |||  ||| || || 
------------------------------------------------------------------------------------------------------------gtaagtttctgaatttctctctctgtttgg--tgcggtataagcgacttctctgctccagGTGTATGTTGCATAATTTTGGTGGAAATCACGAAATGTATGGGAGGCTTGATGTAGTCTCTTCAGGTCCAGTTGATGCTAAAACTAGTGCAAACTCTACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctgggtttatctgtaacaaatatgcttaccatgtcaatttttgttacaaatcagGTGTATGTTGCATAACTTTGGTGGAAATATTGAAATGTATGGCATATTAGATGCAGTTTCTTCTGGTCCAGTTGATGCTCGCATCAGTAAAAATTCAACC
                       tgcttac  putative branch site (score: 2)
                                      tttttgtt  putative PPT
                                    aatttttgttacaaat  TA-rich tract