1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...gttcttattctgtttctccttggtcactaccctaatttttctgaaaaataaaatcctgcaagaagtgattaaattttgtttgatggggctgacattacagCGGTACCAATGGTGGAAGCTGCAGTAGCCCTGGTGCTTGTGGATCAGTTGATGGCACAGTATGCACAATGTGAGCTGTTTCCCATCAATCCAGCTTTACA
species | Vitis vinifera |
transcript | Vv13s0019g04190.t01 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: GACAGAGCTAATAGCTCGTGGCCGCCATGATCCATGTGTTGTTCCACGAG CGGTACCAATGGTGGAAGCTGCAGTAGCCCTGGTGCTTGTGGATCAGTTGAEST: gi|30326726|gb|CD009988.1|CD009988
genomic: GACAGAGCTAATAGCTCGTGGCCGCCATGATCCATGTGTTGTTCCACGAGgtttgtttct ... gacattacagCGGTACCAATGGTGGAAGCTGCAGTAGCCCTGGTGCTTGTGGATCAGTTGA
EST: GACAGAGCTAATAGCTCGTGGCCGCCATGATCCATGTGTTGTTCCACGAG CGGTACCAATGGTGGAAGCTGCAGTAGCCCTGGTGCTTGTGGATCAGTTGAEST: gi|156737328|gb|EV241442.1|EV241442
genomic: GACAGAGCTAATAGCTCGTGGCCGCCATGATCCATGTGTTGTTCCACGAGgtttgtttct ... gacattacagCGGTACCAATGGTGGAAGCTGCAGTAGCCCTGGTGCTTGTGGATCAGTTGA
EST: GACAGAGCTAATAGCTCGTGGCCGCCATGATCCATGTGTTGTTCCACGAG CGGTACCAATGGTGGAAGCTGCAGTAGCCCTGGTGCTTGTGGATCAGTTGAEST: gi|32249612|gb|CD715431.1|CD715431
genomic: GACAGAGCTAATAGCTCGTGGCCGCCATGATCCATGTGTTGTTCCACGAGgtttgtttct ... gacattacagCGGTACCAATGGTGGAAGCTGCAGTAGCCCTGGTGCTTGTGGATCAGTTGA
EST: GACAGAGCTAATAGCTCGTGGCCGCCATGATCCATGTGTTGTTCCACGAG CGGTACCAATGEST: gi|30131232|gb|CB916571.1|CB916571
genomic: GACAGAGCTAATAGCTCGTGGCCGCCATGATCCATGTGTTGTTCCACGAGgtttgtttct ... gacattacagCGGTACCAATG
EST: GACAGAGCTAATAGCTCGTGGCCGCCATGATCCATGTGTTGTTCCACGAG CGGTACCAATGGTGGAAGCTGCAGTAGCCCTGGTGCTTGTGGATCAGTTGAEST: gi|71883350|gb|DT032405.1|DT032405
genomic: GACAGAGCTAATAGCTCGTGGCCGCCATGATCCATGTGTTGTTCCACGAGgtttgtttct ... gacattacagCGGTACCAATGGTGGAAGCTGCAGTAGCCCTGGTGCTTGTGGATCAGTTGA
EST: GACAGAGCTAATAGCTCGTGGCCGCCATGATCCATGTGTTGTTCCACGAG CGGTACCAATGGTGGAAGCTGCAGTAGCCCTGGTGCTTGTGGATCAGTTGAEST: gi|32247169|gb|CD712988.1|CD712988
genomic: GACAGAGCTAATAGCTCGTGGCCGCCATGATCCATGTGTTGTTCCACGAGgtttgtttct ... gacattacagCGGTACCAATGGTGGAAGCTGCAGTAGCCCTGGTGCTTGTGGATCAGTTGA
EST: GACAGAGCTAATAGCTCGTGGCCGCCATGATCCATGTGTTGTTCCACGAG CGGTACCAATGGTGGAAGCTGCAGTAGCCCTGGTGCTTGTGGATCAGTTGAEST: gi|352785536|gb|FQ475539.1|FQ475539
genomic: GACAGAGCTAATAGCTCGTGGCCGCCATGATCCATGTGTTGTTCCACGAGgtttgtttct ... gacattacagCGGTACCAATGGTGGAAGCTGCAGTAGCCCTGGTGCTTGTGGATCAGTTGA
EST: GACAGAGCTAATAGCTCGTGGCCGCCATGATCCATGTGTTGTTCCACGAG CGGTACCAATGGTGGAAGCTGCGGTAGCCCTGGTGCTTGTGGATCAGTTGAEST: gi|110395213|gb|EC960849.1|EC960849
genomic: GACAGAGCTAATAGCTCGTGGCCGCCATGATCCATGTGTTGTTCCACGAGgtttgtttct ... gacattacagCGGTACCAATGGTGGAAGCTGCAGTAGCCCTGGTGCTTGTGGATCAGTTGA
EST: GACAGAGCTAATAGCTCGTGGCCGCCATGATCCATGTGTTGTTCCACGAG CGGTACCAATGGTGGAAGCTGCAGTAGCCCTGGTGCTTGTGGATCAGTTGAEST: gi|29783210|gb|CB349240.2|CB349240
genomic: GACAGAGCTAATAGCTCGTGGCCGCCATGATCCATGTGTTGTTCCACGAGgtttgtttct ... gacattacagCGGTACCAATGGTGGAAGCTGCAGTAGCCCTGGTGCTTGTGGATCAGTTGA
EST: GACAGAGCTAATAGCTCGTGGCCGCCATGATCCATGTGTTGTTCCACGAG CGGTACCAATGGTGGAAGCTGCAGTAGCCCTGGTGCTTGTGGATCAGTTGAEST: gi|352776660|gb|FQ465458.1|FQ465458
genomic: GACAGAGCTAATAGCTCGTGGCCGCCATGATCCATGTGTTGTTCCACGAGgtttgtttct ... gacattacagCGGTACCAATGGTGGAAGCTGCAGTAGCCCTGGTGCTTGTGGATCAGTTGA
EST: GACAGAGCTAATAGCTCGTGGCCGCCATGATCCATGTGTTGTTCCACGAG CGGTACCAATGGTGGAAGCTGCAGTAGCCCTGGTGCTTGTGGATCAGTTGAEST: gi|110703011|gb|EE079483.1|EE079483
genomic: GACAGAGCTAATAGCTCGTGGCCGCCATGATCCATGTGTTGTTCCACGAGgtttgtttct ... gacattacagCGGTACCAATGGTGGAAGCTGCAGTAGCCCTGGTGCTTGTGGATCAGTTGA
EST: GACAGAGCTAATAGCTCGTGGCCGCCATGATCCATGTGTTGTTCCACGAG CGGTACCAATGGTGGAAGCTGCAGTAGCCCTGGTGCTTGTGGATCAGTTGAEST: gi|32248621|gb|CD714440.1|CD714440
genomic: GACAGAGCTAATAGCTCGTGGCCGCCATGATCCATGTGTTGTTCCACGAGgtttgtttct ... gacattacagCGGTACCAATGGTGGAAGCTGCAGTAGCCCTGGTGCTTGTGGATCAGTTGA
EST: GACAGAGCTAATAGCTCGTGGCCGCCATGATCCATGTGTTGTTCCACGAG CGGTACCAATGGTGGAAGCTGCAGTAGCCCTGGTGCTTGTGGATCAGTTGAEST: gi|110378991|gb|EC944156.1|EC944156
genomic: GACAGAGCTAATAGCTCGTGGCCGCCATGATCCATGTGTTGTTCCACGAGgtttgtttct ... gacattacagCGGTACCAATGGTGGAAGCTGCAGTAGCCCTGGTGCTTGTGGATCAGTTGA
EST: GACAGAGCTAATAGCTCGTGGCCGCCATGATCCATGTGTTGTTCCACGAG CGGTACCAATGGTGGAAGCTGCAGTAGCCCTGGTGCTTGTGGATCAGTTGAEST: gi|352777955|gb|FQ467008.1|FQ467008
genomic: GACAGAGCTAATAGCTCGTGGCCGCCATGATCCATGTGTTGTTCCACGAGgtttgtttct ... gacattacagCGGTACCAATGGTGGAAGCTGCAGTAGCCCTGGTGCTTGTGGATCAGTTGA
EST: GACAGAGCTAATAGCTCGTGGCCGCCATGATCCATGTGTTGTTCCACGAG CGGTACCAATGGTGGAAGCTGCAGTAGCCCTGGTGCTTGTGGATCAGTTGAEST: gi|110371972|gb|EC936111.1|EC936111
genomic: GACAGAGCTAATAGCTCGTGGCCGCCATGATCCATGTGTTGTTCCACGAGgtttgtttct ... gacattacagCGGTACCAATGGTGGAAGCTGCAGTAGCCCTGGTGCTTGTGGATCAGTTGA
EST: GACAGAGCTAATAGCTCGTGGCCGCCATGATCCATGTGTTGTTCCACGAG CGGTACCAATGGTGGAAGCTGCAGTAGCCCTGGTGCTTGTGGATCAGTTGAEST: gi|156737322|gb|EV241443.1|EV241443
genomic: GACAGAGCTAATAGCTCGTGGCCGCCATGATCCATGTGTTGTTCCACGAGgtttgtttct ... gacattacagCGGTACCAATGGTGGAAGCTGCAGTAGCCCTGGTGCTTGTGGATCAGTTGA
EST: GACAGAGCTAATAGCTCGTGGCCGCCATGATCCATGTGTTGTTCCACGAG CGGTACCAATGGTGGAAGCTGCAGTAGCCCTGGTGCTTGTGGATCAGTTGAEST: gi|29783264|gb|CB349323.2|CB349323
genomic: GACAGAGCTAATAGCTCGTGGCCGCCATGATCCATGTGTTGTTCCACGAGgtttgtttct ... gacattacagCGGTACCAATGGTGGAAGCTGCAGTAGCCCTGGTGCTTGTGGATCAGTTGA
EST: GACAGAGCTAATAGCTCGTGGCCGCCATGATCCATGTGTTGTTCCCCGAG CGGTACCAATGGTGGAAGCTGCAGTAGCCCTGGTGCTTGTGGATCAGTTGAEST: gi|30324763|gb|CD008025.1|CD008025
genomic: GACAGAGCTAATAGCTCGTGGCCGCCATGATCCATGTGTTGTTCCACGAGgtttgtttct ... gacattacagCGGTACCAATGGTGGAAGCTGCAGTAGCCCTGGTGCTTGTGGATCAGTTGA
EST: GACAGAGCTAATAGCTCGTGGCCGCCATGATCCATGTGTTGTTCCACGAG CGGTACCAATGGTGGAAGCTGCAGTAGCCCTGGTGCTTGTGGATCAGTTGA
genomic: GACAGAGCTAATAGCTCGTGGCCGCCATGATCCATGTGTTGTTCCACGAGgtttgtttct ... gacattacagCGGTACCAATGGTGGAAGCTGCAGTAGCCCTGGTGCTTGTGGATCAGTTGA
aaataaaatcctgcaagaagtgattaaattttgtttgatggggctgacattacagCGGTACCAATGGTGGAAGCTGCAGTAGCCCTGGTGCTTGTGGATCAGTTGATGGCACAGTATGCACAATGTGAGCTGTTTCCCATCAATCCAGCTTTACA
ggctgac putative branch site (score: 3)
attaaattttgtttga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcttattctgtttctccttggtcactaccctaatttttctgaaaaataaaatcctgcaagaagtgattaaattttgtttgatggggctgacattacagCGGTACCAATGGTGGAAGCTGCAGTAGCCCTGGTGCTTGTGGATCAGTTGATGGCACAGTATGCACAATGTGAGCTGTTTCCCATCAATCCAGCTTTACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - -ctgtttc
- - - - - - - - tccttgg
- - - - - - - - - - - - cactacc
- - - - - - - - - - - - - - - - - - - - - - aaaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - -tcctgca