Sequence
atgc intronic sequence ATGC exonic sequence...gtatatatgtgtatacactcatttttctttcatgttcaattgacctaatgattttctatgtacttcaatttacattcaatgttttgtcatttattctcagGATTGGCAATAGCTGCAGACAAAAATTTTAAGACATTTGAAGCTGCATATCCTTATGTTGTTCAGAAGCTTCTCACTGATAACTCACCTGCCACAAGGAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0019g04130.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA10G35610.1 (Glycine max), 3'ss of exon 12
----gtatatatgtgtatacactcatttttctttcatgttcaattgacctaatgattttctatgtacttcaatttacattcaatgttttgtcatttattctcagGATTGGCAATAGCTGCAGACAAAAATTTTAAGACATTTGAAGCTGCATATCCTTATGTTGTTCAGAAGCTTCTCACTGATAACTCACCTGCCACAAGGAG
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agatacatgaatggttccatactatatttctaatcatattgaatt--tctaat-atttcctttacattatctttta-actcattttaatttgaaacaatttcagGTTTGGCTATTGCTGCAGATACAAATTTCAAGACTTTTGAAGCTGCATATCCTTATGTTGTTCGGAAACTTCTCACAGAGAACTCAGCTGCAACAAGGAA
upper sequence: Vv13s0019g04130.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA20G31940.1 (Glycine max), 3'ss of exon 12
gtatatatgtgtatacactcatttttctttcatgttca-attgacctaatgattttctatgtacttcaatttacattcaatgttttgtcat---ttattctcagGATTGGCAATAGCTGCAGACAAAAATTTTAAGACATTTGAAGCTGCATATCCTTATGTTGTTCAGAAGCTTCTCACTGATAACTCACCTGCCACAAGGAG
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----acacatgaatagttccatactaaatttctaatcatattgaatttataatattttccttacattatcttttaactcatattttgctttgaaacaatttcagGTTTGGCTATAGCTGCCGATACAAATTTCAAGACTTTTGAAGCTGCATATCCTTATGTTGTTCGGAAACTTCTCACAGAGAACTCAGCTGCAACAAGGAA
upper sequence: Vv13s0019g04130.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: AT2G39190.2 (Arabidopsis thaliana), 3'ss of exon 12
--------------------------------------------------------------------------gtatatatg-tgtatacactcatttttctttcatgttcaattgacctaatgattt----tctatgtacttcaa---ttta--cattcaatgttttgtcatttattctcagGATTGGCAATAGCTGCAGACAAAAATTTTAAGACATTTGAAGCTGCATATCCTTATGTTGTTCAGAAGCTTCTCACTGATAACTCACCTGCCACAAGGAG
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gtacttgtgattgagtccttgattgtttgtttgataactttatttgtcatttctttctagccatgcttggtttcctttacttggcattttgcgtcattctttttgttggcttatatcgtagaagaatatgtaatccatttgtttccatcctttagttatttgctttctattcttgtcttcccagGTCTGGCTGCAGCTGGAGATCCAAATTTTAAGACATTTGAGGCAGCATACCCTTTTGTGGTTCAAAAGCTCATCACTGAAAATTCAGCTGCAACAAGGAA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.taatgattttctatgtacttcaatttacattcaatgttttgtcatttattctcagGATTGGCAATAGCTGCAGACAAAAATTTTAAGACATTTGAAGCTGCATATCCTTATGTTGTTCAGAAGCTTCTCACTGATAACTCACCTGCCACAAGGAG
acctaat putative branch site (score: 3)
tttattctc putative PPT
aatttacattcaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatatatgtgtatacactcatttttctttcatgttcaattgacctaatgattttctatgtacttcaatttacattcaatgttttgtcatttattctcagGATTGGCAATAGCTGCAGACAAAAATTTTAAGACATTTGAAGCTGCATATCCTTATGTTGTTCAGAAGCTTCTCACTGATAACTCACCTGCCACAAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - -cactcat
- - - - - - - - - - - - - - - catgttc
- - - - - - - - - - - - - - - - - - - - - -cctaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cattcaa