Sequence
atgc intronic sequence ATGC exonic sequence...ctacaagttcgataaactacacctgcatcatgattttttgaaactcaattattattttatatcactgctgctgctctctgaccttcatttactttggcagCTTTTGGAGAAGATTACGGAGAAATTTGATTCAATTATAAGTTCATTCACTCATTTAGACAAAGAGTTCACCCATATGATACAGATAACCAAATCTTACC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0019g00680.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA10G43560.1 (Glycine max), 3'ss of exon 12
---ctacaagttcgataaactacacctgcatcatgattttttgaaactcaattattattttatatcactgctgctgctctctgaccttcatttactttg-gcagCTTTTGGAGAAGATTACGGAGAAATTTGATTCAATTATAAGTTCATTCACTCATTTAGACAAAGAGTTCACCCATATGATACAGATAACCAAATCTTACC
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gacttatgatttgcaaatcatatattggcttaacatactcttct--ttaggctgtcggtatat-tcttttttgtctcact-tgtttctctttaaatctgtgcagCTCTTGGATTTTGTGACAGAGAAATTTGATTCATTAATAAGTTCATTCACTCATTTGGATGAAGAGTTCTCTCATATGATTCAGATAACCAAAACTCACA
upper sequence: Vv13s0019g00680.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA20G23240.1 (Glycine max), 3'ss of exon 15
-ctacaagttcgataaac-tacacctgcatcatgattttttgaaactcaattattattttatatcactgctgctgctctctgaccttcatttactttggcagCTTTTGGAGAAGATTACGGAGAAATTTGATTCAATTATAAGTTCATTCACTCATTTAGACAAAGAGTTCACCCATATGATACAGATAACCAAATCTTACC
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acttttgatttgcaaagcatatattggc-ttaagatagtcttct-ttaggctgtctgcatattcattttttgtctcacttgtttctctttaaatctttgcagCTCTTGGATTTTGTGACAGAGAAATTTGATTCACTAATAAGTTCATTCACTCATTTGGATGGAGAGTTCTCTCATATGATTCAGATAACCAAAATTCACA
upper sequence: Vv13s0019g00680.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA18G52540.1 (Glycine max), 3'ss of exon 9
---ctacaagttcgataaactacacctgcatcatgattttttgaaactcaattattattttatatcactgctgctgctctctgaccttcatttactttggcagCTTTTGGAGAAGATTACGGAGAAATTTGATTCAATTATAAGTTCATTCACTCATTTAGACAAAGAGTTCACCCATATGATACAGATAACCAAATCTTACC
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taagtttgttttacattcattatacccat-taataaatattaggaaattg-ttgtcacttttaatt-ttaatatatttcctcgtatatgctaaatctttgcagCTACTGGAAGTTGTAGCAGAGAAATTTGATTCTGTAATAAGTACATTTACTCATTTGGACAAAGAGTTCTCTCATATGAATCAGATAACCAAATCTCTCA
upper sequence: Vv13s0019g00680.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA02G10370.1 (Glycine max), 3'ss of exon 12
ctacaagttcgataaactacacctgcatcatgatttttt---gaaactcaattattattttatatcactgctgc-tgctctctgaccttcattta-ctttggcagCTTTTGGAGAAGATTACGGAGAAATTTGATTCAATTATAAGTTCATTCACTCATTTAGACAAAGAGTTCACCCATATGATACAGATAACCAAATCTTACC
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atataagttt-----attttacattcattatactccttaataaagattaagttgttgtcacttttaattttaatatatttcctcatatatgttaaatctttgcagCTACTGGAAGTTGTAGCAGAGAAATTTGATGCTGTAATAAGTACGTTTACTCATTTGGACAAAGAGTTCTCTCATATGAATCAGATAACCAAATCTCTCA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.caattattattttatatcactgctgctgctctctgaccttcatttactttggcagCTTTTGGAGAAGATTACGGAGAAATTTGATTCAATTATAAGTTCATTCACTCATTTAGACAAAGAGTTCACCCATATGATACAGATAACCAAATCTTACC
ctctgac putative branch site (score: 3)
ccttcatttacttt CT-rich tract
attattttatatcact TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ctacaagttcgataaactacacctgcatcatgattttttgaaactcaattattattttatatcactgctgctgctctctgaccttcatttactttggcagCTTTTGGAGAAGATTACGGAGAAATTTGATTCAATTATAAGTTCATTCACTCATTTAGACAAAGAGTTCACCCATATGATACAGATAACCAAATCTTACC
- - - - - - - - ctacacc
- - - - - - - - - - - - -catcatg
- - - - - - - - - - - - - - - - - - - - aaactca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -actgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - accttca