1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...attggatgccatgttgttgtgaagttgacttgcaggcatattgtaaatcatcaaataaatttttctgaccaaataggatgctattttgtggatgatacagGAACCTTTTGCTTCCGGCAATTTGAACATCTGTATCCGACAGCCAGATGGGTCTTACTCTGGGGATTCATTGGAGAGCCCAAAGGGTAATTTGGAAGATT
species | Vitis vinifera |
transcript | Vv12s0142g00100.t01 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: GATGCCGACCTATTCTCTTCCATTCAGAGGGCCAAGAGACTGTTGATCAG GAACCTTTTGCTTCCGGCAATTTGAACATCTGTATCCGACAGCCAGATGGGEST: gi|351017816|gb|FQ436169.1|FQ436169
genomic: GATGCCGACCTATTCTCTTCCATTCAGAGGGCCAAGAGACTGTTGATCAGgtaacatagc ... gatgatacagGAACCTTTTGCTTCCGGCAATTTGAACATCTGTATCCGACAGCCAGATGGG
EST: GATGCCGACCTATTCTCTTCCATTCAGAGGGCCAAGAGACTGTTGATCAG GAACCTTTTGCTTCCGGCAATTTGAACAATCTGTATCCGACAGCCAGATGGEST: gi|34544219|gb|CF512451.1|CF512451
genomic: GATGCCGACCTATTCTCTTCCATTCAGAGGGCCAAGAGACTGTTGATCAGgtaacatagc ... gatgatacagGAACCTTTTGCTTCCGGCAATTTGAACA-TCTGTATCCGACAGCCAGATGG
EST: GATGCCGACCTATTCTCTTCCATTCAGAGGGCCAAGAGACTGTTGATCAG GAACCTTTTGCTTCCGGCAATTTGAACATCTGTATCCGACAGCCAGATGGG
genomic: GATGCCGACCTATTCTCTTCCATTCAGAGGGCCAAGAGACTGTTGATCAGgtaacatagc ... gatgatacagGAACCTTTTGCTTCCGGCAATTTGAACATCTGTATCCGACAGCCAGATGGG
aatcatcaaataaatttttctgaccaaataggatgctattttgtggatgatacagGAACCTTTTGCTTCCGGCAATTTGAACATCTGTATCCGACAGCCAGATGGGTCTTACTCTGGGGATTCATTGGAGAGCCCAAAGGGTAATTTGGAAGATT
ttctgac putative branch site (score: 2)
tcaaataaatttttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attggatgccatgttgttgtgaagttgacttgcaggcatattgtaaatcatcaaataaatttttctgaccaaataggatgctattttgtggatgatacagGAACCTTTTGCTTCCGGCAATTTGAACATCTGTATCCGACAGCCAGATGGGTCTTACTCTGGGGATTCATTGGAGAGCCCAAAGGGTAATTTGGAAGATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - ccatgtt
- - - - - - - - - - - - - - - -gcaggca
- - - - - - - - - - - - - - - - - - - - - - aaatcat
- - - - - - - - - - - - - - - - - - - - - - - - - - aaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaccaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggatgct