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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagggccttataattactgtttcttatttagctagaatttatatgtttcatattaattccctgctccacttatttttcagGTTTTTCATACTTGGCTCTCTCTGCAACAGCAGCATTTATGCAGCATCTCATCCTATACTTCTGGAACAGATTTGAG

Basic information

species Vitis vinifera
transcript Vv12s0034g02140.t01
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0034g02140.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA15G05080.1 (Glycine max), 3'ss of exon 12
gtagggccttataattactgtttcttatttagctagaatttatatgtttcatattaattccctgctccacttatttttcagGTTTTTCATACTTGGCTCTCTCTGCAACAGCAGCATTTATGCAGCATCTCATCCTATACTTCTGGAACAGATTTGAG
||| || | ||   ||  | | | ||  || | |  | || || |  ||   |  |||     | |  |   | |||||||||||||| || |||||||| ||| |||| || || |||||||| || || ||||| ||||| |||||  | ||||||
gtatggtcatactgtt--tttctatttgttggtttaagttaatttcatttgga--aataatgagtttta---aattttcagGTTTTTCGTATTTGGCTCTTTCTACAACCGCGGCTTTTATGCAACACCTTATCCTGTACTTTTGGAATCGGTTTGAG

upper sequence: Vv12s0034g02140.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA08G19970.1 (Glycine max), 3'ss of exon 12
gtagggccttataatta--ctgtttctta-tttagctagaatttatatgtttcatattaattccctgctccacttatttttcagGTTTTTCATACTTGGCTCTCTCTGCAACAGCAGCATTTATGCAGCATCTCATCCTATACTTCTGGAACAGATTTGAG
||| |  | ||  |||   || ||| ||  ||||| | |  |   |   |||||| |  |     ||      | | ||| ||||||||||||| ||||| || ||| |||| ||||| |||||||| || || ||||| ||||| |||||  | ||||||
gtatgttcgtactatttttctattttttggtttagttggcttaagttaatttcatttggaaataatgagtt-ttaaatttccagGTTTTTCATATTTGGCCCTTTCTACAACTGCAGCTTTTATGCAACACCTTATCCTGTACTTTTGGAATCGGTTTGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttagctagaatttatatgtttcatattaattccctgctccacttatttttcagGTTTTTCATACTTGGCTCTCTCTGCAACAGCAGCATTTATGCAGCATCTCATCCTATACTTCTGGAACAGATTTGAG
                         tattaat  putative branch site (score: 2)
                               ttccctgctccactta  CT-rich tract
       tagaatttatatgttt  TA-rich tract