1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...ctatatttatgctgaatggtgagagaatacaatagttgtaaccttttcgatttccaaaatatgtttctaaataacatttgcatgataatcaatgtttcagGTTTGGAAGTGGTAATCTCCATCCGGCCGGGAAATGGACCTCTCCCAGAAAATCATGGGTTTAGAACTATAGAAACCTTTTTGGAAATCTAATACAAAAT
species | Vitis vinifera |
transcript | Vv12s0028g03470.t01 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: GTTATTTGTGACAGATGTCTTCCAAGAAGCTGTTGCTGCAAGGGCTGCAG GTTTGGAAGTGGTAATCTCCATCCGGCCGGGAAATGGACCTCTCCCAGAAAEST: gi|30131293|gb|CB916632.1|CB916632
genomic: GTTATTTGTGACAGATGTCTTCCAAGAAGCTGTTGCTGCAAGGGCTGCAGgtaactttct ... aatgtttcagGTTTGGAAGTGGTAATCTCCATCCGGCCGGGAAATGGACCTCTCCCAGAAA
EST: GTTATTTGTGACAGATGTCTTCCAAGAAGCTGTTGCTGCAAGGGCTGCAG GTTTGGAAGTGGTAATCTCCATCCGGCCGGGAAATGGACCTCTCCCAGAAA
genomic: GTTATTTGTGACAGATGTCTTCCAAGAAGCTGTTGCTGCAAGGGCTGCAGgtaactttct ... aatgtttcagGTTTGGAAGTGGTAATCTCCATCCGGCCGGGAAATGGACCTCTCCCAGAAA
ttcgatttccaaaatatgtttctaaataacatttgcatgataatcaatgtttcagGTTTGGAAGTGGTAATCTCCATCCGGCCGGGAAATGGACCTCTCCCAGAAAATCATGGGTTTAGAACTATAGAAACCTTTTTGGAAATCTAATACAAAAT
aaataac putative branch site (score: 2)
aaaatatgtttctaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctatatttatgctgaatggtgagagaatacaatagttgtaaccttttcgatttccaaaatatgtttctaaataacatttgcatgataatcaatgtttcagGTTTGGAAGTGGTAATCTCCATCCGGCCGGGAAATGGACCTCTCCCAGAAAATCATGGGTTTAGAACTATAGAAACCTTTTTGGAAATCTAATACAAAAT
- - - - - - tgaatgg
- - - - - - - - - - - - -aatacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaatat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -taaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catttgc