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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgatgcttcattttcttgatattttctaatacaatgaaagtgttgttggccccatacttaaattaacttacacgacattaacagGACATGAGTGTGGATACATCATGGAATATTTTGAGGCCTGAAACTATTGAGTCATTGTTTTACCTCTGGCGTATCACTGGGAACAAGACTTACCAAGAAT

Basic information

species Vitis vinifera
transcript Vv11s0052g00140.t01
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0052g00140.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA17G06600.1 (Glycine max), 3'ss of exon 12
gtttga-tgcttcattttcttgatattttctaatacaatgaaagtgttgttggccccatacttaaattaacttacacgacattaacagGACATGAGTGTGGATACATCATGGAATATTTTGAGGCCTGAAACTATTGAGTCATTGTTTTACCTCTGGCGTATCACTGGGAACAAGACTTACCAAGAAT
|||||| |  || ||| ||    |  |    ||  |    ||  |||| |        | || |  ||||       || | |   |||| |||||||| | ||| || ||||||||    ||||||||||| ||||||||  | || ||||| |||||| ||||||| ||||| || ||||||||||
gtttgaatctttaattctcacattgctagtcaaatcccccaagatgttat-------gtgctaaggttaa-------gaaaattgtagGATATGAGTGTTGGTACCTCGTGGAATATCCAAAGGCCTGAAACAATTGAGTCTCTATTCTACCTTTGGCGTTTCACTGGAAACAAAACATACCAAGAAT

upper sequence: Vv11s0052g00140.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: AT1G51590.1 (Arabidopsis thaliana), 3'ss of exon 12
gtttgatgcttcattttcttgatattttctaatacaatgaaagtgttgttggccccatacttaaattaacttacacgacattaacagGACATGAGTGTGGATACATCATGGAATATTTTGAGGCCTGAAACTATTGAGTCATTGTTTTACCTCTGGCGTATCACTGGGAACAAGACTTACCAAGAAT
  ||| |   | | ||| |    || |  |  ||   |    | |||| |     | ||   | |  | |  ||| ||   |  |||||||||||||| |  ||||| ||||| ||||| || || |||||  |||| ||| ||||||||||||||||  | |||||||||||||| || ||||| |
-gttggtaaat-actttttgcgcatctgtttgtatgttagttg-gttggttatgtcgtatccata--agc--acatgattgtttcagGACATGAGTGTTGGCACATCTTGGAACATTTTAAGACCAGAAACCGTTGAATCACTGTTTTACCTCTGGCGATTAACTGGGAACAAGACATATCAAGAGT

upper sequence: Vv11s0052g00140.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: AT3G21160.1 (Arabidopsis thaliana), 3'ss of exon 12
gtttgatgcttcattttcttgatattttctaatacaatgaaagtgttgttggccccatacttaaattaacttacacgacattaacagGACATGAGTGTGGATACATCATGGAATATTTTGAGGCCTGAAACTATTGAGTCATTGTTTTACCTCTGGCGTATCACTGGGAACAAGACTTACCAAGAAT
      |   |||||| | ||   ||||| || ||| ||    | || |  ||   ||   |   |||   |||| ||   |  |||||||||||||| |  || || ||||| || ||||| || |||||| | || ||| ||||||||||||||||  | ||||| |||||||| || ||||| |
-----gtatgtcatttgcctgtctttttcaaacacattgtttattttat--gcgttatttattgtttagtatacatgatgatt-cagGACATGAGTGTTGGAACGTCGTGGAACATCTTGAGACCAGAAACTGTCGAATCACTGTTTTACCTCTGGCGGTTAACTGGAAACAAGACATATCAAGAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacaatgaaagtgttgttggccccatacttaaattaacttacacgacattaacagGACATGAGTGTGGATACATCATGGAATATTTTGAGGCCTGAAACTATTGAGTCATTGTTTTACCTCTGGCGTATCACTGGGAACAAGACTTACCAAGAAT
                                   aacttac  putative branch site (score: 2)
                        atacttaaattaactt  TA-rich tract