Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtgttattcatcaatactttgggagttgcattgaaattttttgcaactattttgttgtgtatttccagtgtgaagggcactcatttctattttatgttgaatgaattccatatagatttagaatactaaataggattctctgatgaaattctgcttggttattcagATTGAGGCTCATGTTGGTAGTGTTAATGATCTTGCTTTCTCTTATCCAAACAAACTTTGCGTTGTCACTTGTGGCGAGGACAGGTTCATTAAG

Basic information

species Vitis vinifera
transcript Vv11s0016g05620.t01
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0016g05620.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA17G12110.1 (Glycine max), 3'ss of exon 12
gtttgtgttattcatcaatactttgggagttgcattgaaattttttgcaactattttgttgtgtatt---tccagtgtgaagggcactcatttctattttatg--ttgaatgaattccatatagatttagaatactaaata-ggattctctgatgaaattctgcttggttattcagATTGAGGCTCATGTTGGTAGTGTTAATGATCTTGCTTTCTCTTATCCAAACAAAC---TTTGCGTTGTCACTTGTGGCGAGGACAGGTTCATTAAG
          ||  |   |   |    |  | ||||  |  || |   | ||  ||  || | ||||   |  |  || |       | || || | | |||   ||||| | |        | |  |    | ||  |||   |    || |   | ||    || ||  |||||||||| ||||||| ||| ||||| ||||||||||| || || |||||||||||||   |||| ||||| || ||||| ||||| ||| |||| |||
---------gtttgtttgtctctcttaatgttcattagatcttctatgagctcattatttttctattaaatttatagtcattctttattatgtccaatctatacattgaaagcaaaaggcccacaacttatgtgcttgatatatagctgcttactcagtt----tttgtggttcagATTGAAGCTCATGCTGGGAGTGTCAATGATCTTGCCTTTTCATATCCAAACAAACAGCTTTGTGTTGTGACCTGTGGAGAGGATAGGGTCATCAAG

upper sequence: Vv11s0016g05620.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA13G22720.1 (Glycine max), 3'ss of exon 12
gtttgtgttattcatcaatactttgggagttgcattgaaattttttgcaactattttgttgtgtatttccagtgtga--agggcactcatttctattttat--gttgaatgaattccatatagatttagaatactaaataggattct-ctgatgaaattctgcttggttattcagATTGAGGCTCATGTTGGTAGTGTTAATGATCTTGCTTTCTCTTATCCAAACAAAC---TTTGCGTTGTCACTTGTGGCGAGGACAGGTTCATTAAG
          ||  |   |   |     ||  |||| | || || |  ||   | || || | ||||     | | |  |   |  | || || | | |||   ||||| | |        | |  |    | ||  ||| |   || || |   | ||    || ||  |||||||||| ||||||| ||| ||||| || ||||| ||||| ||||||||||||||||   |||| ||||| || ||||| ||||| ||| |||| |||
---------gtttgtttgtctctctaatgtc-catt-agatcttctataagcttgttattttctattaaatttataaccattccttttatgtccaatctatacattgaaagcaaaaggcccacaacttatgtgcttgatatgtagctgcttactcagtt----tttgtggttcagATTGAAGCTCATGCTGGGAGTGTCAACGATCTCGCTTTTTCTTATCCAAACAAACAGCTTTGTGTTGTGACCTGTGGAGAGGATAGGGTCATCAAG

upper sequence: Vv11s0016g05620.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: PP1S316_34V6.1 (Physcomitrella patens), 3'ss of exon 11
gtttgtgttattcatcaatactttgggagttgcattgaaatttt-ttgcaactattttgttgtgtatttccagtgtgaagggcactcatttctattttatgttgaatgaattccatatagatttagaatactaaataggattctctgatgaaattctgcttggttattcagATTGAGGCTCATGTTGGTAGTGTTAATGATCTTGCTTTCTCTTATCCAAACAAAC---TTTGCGTTGTCACTTGTGGCGAGGACAGGTTCATTAAG
                      |    |  |  ||  | | ||   |  | || |||  |  | | ||||     |  ||| |     ||||  |       |   ||   ||  |||  | |     |    ||| ||      || |||     ||  || |   ||||||||| |||||||| ||  ||||||| ||| | ||||||||| ||||||||||||   | || ||  | ||||| || || || |     || |||
-------------------gtctgcttaaatatatccagacttgactatatctgttt--tcatttttttctgactttgaggac---tgtttccttccccccct--ctgccctcattatccact---gttgacgaattgg------tgctga-----tgtgtgttgtatcagATTGACGCTCATGTAGGCGGTGTTAACGATTTGGCTTTCTCTCATCCAAACAAACAATTATGTGTCATTACTTGCGGAGATGATAAAACTATCAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atagatttagaatactaaataggattctctgatgaaattctgcttggttattcagATTGAGGCTCATGTTGGTAGTGTTAATGATCTTGCTTTCTCTTATCCAAACAAACTTTGCGTTGTCACTTGTGGCGAGGACAGGTTCATTAAG
     tttagaatactaaata  TA-rich tract