1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...aactctttgatttttgttgtaagcttgaaacctcccactttctgactatactttctccttgaacatatgaatgattgtctcctttttctttctgaaacagGATGAATGGACTGGAGAGCAAAAACTACAGTATGCTGATGTTCCGGAAGATATTGAGCCTGAAGAAATTCGGCCAATGGGAAATTATGCTGTATCAATAA
species | Vitis vinifera |
transcript | Vv11s0016g04250.t01 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: TTCTGCATCCTGCTACTGTAAGACGGAATGATCGATCTGCCCAAAGTGTG GATGAATGGACTGGAGAGCAAAAACTACAGTATGCTGATGTTCCGGAAGATEST: gi|30328118|gb|CD011380.1|CD011380
genomic: TTCTGCATCCTGCTACTGTAAGACGGAATGATCGATCTGCCCAAAGTGTGgtatgtgggg ... tctgaaacagGATGAATGGACTGGAGAGCAAAAACTACAGTATGCTGATGTTCCGGAAGAT
EST: TTCTGCATCCTGCTACTGTAAGACGGAATGATCGATCTGCCCAAAGTGTG GATGAATGGACTGGAGAGCAAAAACTACAGTATGCTGATGTTCCGGAAGATEST: gi|32269673|gb|CD718832.1|CD718832
genomic: TTCTGCATCCTGCTACTGTAAGACGGAATGATCGATCTGCCCAAAGTGTGgtatgtgggg ... tctgaaacagGATGAATGGACTGGAGAGCAAAAACTACAGTATGCTGATGTTCCGGAAGAT
EST: TTCTGCATCCTGCTACTGTAAGACGGAATGATCGATCTGCCCAAAGTGTG GATGAATGGACTGGAGAGCAAAAACTACAGTATGCTGATGTTCCGGAAGAT
genomic: TTCTGCATCCTGCTACTGTAAGACGGAATGATCGATCTGCCCAAAGTGTGgtatgtgggg ... tctgaaacagGATGAATGGACTGGAGAGCAAAAACTACAGTATGCTGATGTTCCGGAAGAT
ctatactttctccttgaacatatgaatgattgtctcctttttctttctgaaacagGATGAATGGACTGGAGAGCAAAAACTACAGTATGCTGATGTTCCGGAAGATATTGAGCCTGAAGAAATTCGGCCAATGGGAAATTATGCTGTATCAATAA
tgattgtctccttttt CT-rich tract
tttttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aactctttgatttttgttgtaagcttgaaacctcccactttctgactatactttctccttgaacatatgaatgattgtctcctttttctttctgaaacagGATGAATGGACTGGAGAGCAAAAACTACAGTATGCTGATGTTCCGGAAGATATTGAGCCTGAAGAAATTCGGCCAATGGGAAATTATGCTGTATCAATAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - -acctccc
- - - - - - - - - - - - - - - - - - - -ttctgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - ctccttg