Sequence
atgc intronic sequence ATGC exonic sequence...ttctgttaatgttttaactaatttaaaactaatattttttagataacattctactttgtgttcaatactcctggcttaattagtctctctgcctttttagGTTCGAAAGGGTGGGTGGCGTTATTTGGATACTGGGCAAGTGTTGATTGAGAGTGCGTGCTCAGTGGATCGGGTAGAGGAAGCTTTGAGCACATTGCTAC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv10s0116g00830.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA07G38890.1 (Glycine max), 3'ss of exon 11
ttctgttaatgttttaactaatttaaaact---aatattttttagataacattcta-ctttgtgttcaatactcctggcttaatta-gtctctctgcctttttagGTTCGAAAGGGTGGGTGGCGTTATTTGGATACTGGGCAAGTGTTGATTGAGAGTGCGTGCTCAGTGGATCGGGTAGAGGAAGCTTTGAGCACATTGCTAC
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-----caaatgtgattaataattttgattttaagagacgtgtcattgactattgaagttctgaagttacttttctttttattattgtgtgtttatacgtttgtagGTACGAAAAGGAGGTTGGCGGTATCTGGATACGGGGCAGGTGTTGATTGAGAGTTCATGCTCTGTTGATCGGGTGGAGGAAGCTTTAAGTACATTGCTAC
upper sequence: Vv10s0116g00830.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA17G01850.1 (Glycine max), 3'ss of exon 12
ttctgttaatgttttaactaatttaaaact---aatattttttagataacattcta-ctttgtgttcaatactcctggcttaattagtctctctgcctttttagGTTCGAAAGGGTGGGTGGCGTTATTTGGATACTGGGCAAGTGTTGATTGAGAGTGCGTGCTCAGTGGATCGGGTAGAGGAAGCTTTGAGCACATTGCTAC
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--taacaaatgtgattagtaattttgattttaagagacgtgtcattgactattgaagttctgaagttacttttttta--ttattgtatgtttatacttttgtagGTACGAAAAGGAGGTTGGCGGTATCTGGACACGGGGCAGGTGTTGATTGAGAGTTCATGCTCTGTTGATCGGGTGGAGGAAGCTTTAAGTACATTGCTAC
upper sequence: Vv10s0116g00830.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: AT1G61850.2 (Arabidopsis thaliana), 3'ss of exon 12
----------------------------------------ttctgttaatgttttaactaatttaaaactaatattttttagataacattctacttt-------gtgttcaatactcctggctta--attagtctctctgcctttttagGTTCGAAAGGGTGGGTGGCGTTATTTGGATACTGGGCAAGTGTTGATTGAGAGTGCGTGCTCAGTGGATCGGGTAGAGGAAGCTTTGAGCACATTGCTAC
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gtaattcccgtttttcctgtggctccagattgtgcaaaatctatgtttatgttggaaaaccactgaaat--acatatggtggataaaatcttgccgtccttgtaatgttaagtaattatttttcattgttgatctaact-cccttgtagGTACGGAAAGGTGGATGGCGTTATTTAGATACTGGGCAAGTACTGATTGAGAGTGCATGCTCAGTGGAACGTGTTGAAGAAGCTCTAAGCACATTGCTCC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.acattctactttgtgttcaatactcctggcttaattagtctctctgcctttttagGTTCGAAAGGGTGGGTGGCGTTATTTGGATACTGGGCAAGTGTTGATTGAGAGTGCGTGCTCAGTGGATCGGGTAGAGGAAGCTTTGAGCACATTGCTAC
tctctctgccttttt CT-rich tract
ttaattagt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttctgttaatgttttaactaatttaaaactaatattttttagataacattctactttgtgttcaatactcctggcttaattagtctctctgcctttttagGTTCGAAAGGGTGGGTGGCGTTATTTGGATACTGGGCAAGTGTTGATTGAGAGTGCGTGCTCAGTGGATCGGGTAGAGGAAGCTTTGAGCACATTGCTAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - -aactaat
- - - - - - - - - - - - -aaactaa
- - - - - - - - - - - - - - - - - - - - agataac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - actcctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctctct