Sequence
atgc intronic sequence ATGC exonic sequence...tcgttttcaaggaaaatacattgcattttccttgtgtttgttctcattgctggtgagttgatgtatgatgaactgattttttattttttctttcctatagCTAGCAGCCTTAGACTTTATTGGCTGCACTGCTGCTGATGCATTTGCCATTACAGACTCTGGGAGTCAGTTATCATCTTTGGTATCTGGTTATCGGATAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv10s0116g00130.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA07G39330.1 (Glycine max), 3'ss of exon 6
---tcgttttcaaggaaaata--cattgcatttt--ccttgtgtttgttctcattgctggtgagttgatgtatgatgaactgattttttattttttctttcctatagCTAGCAGCCTTAGACTTTATTGGCTGCACTGCTGCTGATGCATTTGCCATTACAGACTCTGGGAGTCAGTTATCATCTTTGGTATCTGGTTATCGGATAT
|| ||| ||| || || || | | | || ||||| | || | | || | |||||| ||| | | ||||| | || | ||||||| | ||||| || |||||||||||| | |||||||| ||||| || || || || |||||| ||||||||||||| ||||| ||||| ||||
atctctctttttgtgaacatgatcactgaaatagaacactgaatttgtcttagtt-ttacttagccttt---tgatgag-tgacaataagctgtttctgtttta--gTTAGCAGCACTGGACTTCATAGGCTGCACTGCTTCGGATGCATTCGCCATGACTGATTCAGGAAGTCAGCTATCATCTTTGGTGTCTGGATATCGAATAT
upper sequence: Vv10s0116g00130.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA17G01390.1 (Glycine max), 3'ss of exon 7
-tcgttttcaaggaaaata--cattgcatttt--ccttgtgtttgttctcattgctggtgagttgatgtatgatgaactgattttttattttttctttcctatagCTAGCAGCCTTAGACTTTATTGGCTGCACTGCTGCTGATGCATTTGCCATTACAGACTCTGGGAGTCAGTTATCATCTTTGGTATCTGGTTATCGGATAT
|| ||| ||| || || || | | | || |||||| | || || | || | | | || ||| | | ||||| | | ||| ||||||| | ||||| || |||||||||||| | |||||||| ||||| || || || || |||||| ||||||||||||| ||||| ||||| || |
ttctctttttgtgaacatgatcactgaaatagaacactgaatttgttttggtt-ctactc--ttagtcttttgataaatgacaataagctgtttctgt--tgtagTTAGCAGCACTGGACTTCATAGGCTGCACTGCTTCAGATGCATTCGCCATGACTGATTCAGGAAGTCAGCTATCATCTTTGGTGTCTGGGTATCGAATTT
upper sequence: Vv10s0116g00130.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: AT1G11990.1 (Arabidopsis thaliana), 3'ss of exon 10
tcgttttcaaggaaaatacattgcattttccttgtgtttgttctcattgctggtgagttgatgtatgatgaactgattttttattttttctttcctatagCTAGCAGCCTTAGACTTTATTGGCTGCACTGCTGCTGATGCATTTGCCATTACAGACTCTGGGAGTCAGTTATCATCTTTGGTATCTGGTTATCGGATAT
| |||| | ||| | | || | | | | | | | | || |||||| ||| || | |||||||| || ||||| || || | || |||| || || || ||||| || || || || |||||||||||||||||| | ||||| ||||||||||| |
----------gtaaaacttaa-acatagacaaaccatcaaatccta--agtaaaaaccaattttgtattaatct--ttttttcctttggtttatgtgtagCTAGCGGCATTAGATTTCATCGCTTGTGCTGCAGCAGACGCTTTTGCGATGACGGATTCAGGGAGTCAGTTATCATCTCTTGTATCGGGTTATCGGATTT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.attgctggtgagttgatgtatgatgaactgattttttattttttctttcctatagCTAGCAGCCTTAGACTTTATTGGCTGCACTGCTGCTGATGCATTTGCCATTACAGACTCTGGGAGTCAGTTATCATCTTTGGTATCTGGTTATCGGATAT
aactgat putative branch site (score: 3)
ctgattttttattttt CT-rich tract
attttttattttttct TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tcgttttcaaggaaaatacattgcattttccttgtgtttgttctcattgctggtgagttgatgtatgatgaactgattttttattttttctttcctatagCTAGCAGCCTTAGACTTTATTGGCTGCACTGCTGCTGATGCATTTGCCATTACAGACTCTGGGAGTCAGTTATCATCTTTGGTATCTGGTTATCGGATAT
- - - - - ggaaaat
- - - - - - - - - cattgca
- - - - - - - - - - - - - -ttccttg
- - - - - - - - - - - - - - - - - - - - - - - ttgctgg