1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...ttcctagtttccgaagttctattgttacagttatgatgtagcattttctgtctacaaattggttcttggttttatatctgaatatgctactttttgacagGTTTACAAATCAGGGTCCTTCGGAAGATCACTAGATATCACTAAATTCAGCAGCTACCATGAACTGCGTGGTGAGCTTGCTCGCATGTTTGGCCTTGAAG
species | Vitis vinifera |
transcript | Vv10s0003g04100.t01 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: CTCCAGAAAATGTGGGCCAAGTAAACCCACCAACCCGAACCTTTGTTAAG GTTTACAAATCAGGGTCCTTCGGAAGATCACTAGATATCACTAAATTCAGCEST: gi|110362061|gb|EC925568.1|EC925568
genomic: CTCCAGAAAATGTGGGCCAAGTAAACCCACCAACCCGAACCTTTGTTAAGgttagctgcc ... tttttgacagGTTTACAAATCAGGGTCCTTCGGAAGATCACTAGATATCACTAAATTCAGC
EST: CTCCAGAAAATGTGGGCCAAGTAAACCCACCAACCCGAACCTTTGTTAAG GTTTACAAATCAGGGTCCTTCGGAAGATCACTAGATATCACTAAATTCAGCEST: gi|110381261|gb|EC946584.1|EC946584
genomic: CTCCAGAAAATGTGGGCCAAGTAAACCCACCAACCCGAACCTTTGTTAAGgttagctgcc ... tttttgacagGTTTACAAATCAGGGTCCTTCGGAAGATCACTAGATATCACTAAATTCAGC
EST: CTCCAGAAAATGTGGGCCAAGTAAACCCACCAACCCGAACCTTTGTTAAG GTTTACAAATCAGGGTCCTTCGGAAGATCACTAGATATCACTAAATTCAGCEST: gi|110387765|gb|EC952459.1|EC952459
genomic: CTCCAGAAAATGTGGGCCAAGTAAACCCACCAACCCGAACCTTTGTTAAGgttagctgcc ... tttttgacagGTTTACAAATCAGGGTCCTTCGGAAGATCACTAGATATCACTAAATTCAGC
EST: CTCCAGAAAATGTGGGCCAAGTAAACCCACCAACCCGAACCTTTGTTAAG GTTTACAAATCAGGGTCCTTCGGAAGATCACTAGATATCACTAAATTCAGCEST: gi|110386444|gb|EC951038.1|EC951038
genomic: CTCCAGAAAATGTGGGCCAAGTAAACCCACCAACCCGAACCTTTGTTAAGgttagctgcc ... tttttgacagGTTTACAAATCAGGGTCCTTCGGAAGATCACTAGATATCACTAAATTCAGC
EST: CTCCAGAAAATGTGGGCCAAGTAAACCCACCAACCCGAACCTTTGTTAAG GTTTACAAATCAGGGTCCTTCGGAAGATCACTAGATATCACTAAATTCAGC
genomic: CTCCAGAAAATGTGGGCCAAGTAAACCCACCAACCCGAACCTTTGTTAAGgttagctgcc ... tttttgacagGTTTACAAATCAGGGTCCTTCGGAAGATCACTAGATATCACTAAATTCAGC
ttctgtctacaaattggttcttggttttatatctgaatatgctactttttgacagGTTTACAAATCAGGGTCCTTCGGAAGATCACTAGATATCACTAAATTCAGCAGCTACCATGAACTGCGTGGTGAGCTTGCTCGCATGTTTGGCCTTGAAG
ctacttttt CT-rich tract
ttttatatctgaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcctagtttccgaagttctattgttacagttatgatgtagcattttctgtctacaaattggttcttggttttatatctgaatatgctactttttgacagGTTTACAAATCAGGGTCCTTCGGAAGATCACTAGATATCACTAAATTCAGCAGCTACCATGAACTGCGTGGTGAGCTTGCTCGCATGTTTGGCCTTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - tgtagca
- - - - - - - - - - - - - - - - - - - - - - - - - - -acaaatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttcttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgctac