1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtaatttctttcactctgcatcttcaagccagctacgtccctccctcttaaagcttctagttttcttttctcttcactaaattacaccatacaaagaattcagattcagaattagcttaggacttgcttttgaagatcattaattaaacttacgtaacctacttcttcctcttcttggaaacttgattcagCTTTCAAACCTAGCAAGCGTCTGGTTTCTTGGCCTCTTCATCTCCATCATTTTGACCAGTGTGCTTGAGCTTCGGTGGAGTGGTGTAAGCATAGAAGACT
species | Vitis vinifera |
transcript | Vv10s0003g01560.t01 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: GCTCCCTCCCTGCTATATGCCTTCTCACAGGGAAATTTATCATACCAACG CTTTCAAACCTAGCAAGCGTCTGGTTTCTTGGCCTCTTCATCTCCATCATTEST: gi|351016968|gb|FQ424395.1|FQ424395
genomic: GCTCCCTCCCTGCTATATGCCTTCTCACAGGGAAATTTATCATACCAACGgtaatttctt ... cttgattcagCTTTCAAACCTAGCAAGCGTCTGGTTTCTTGGCCTCTTCATCTCCATCATT
EST: GCTCCCTCCCTGCTATATGCCTTCTCACAGGGAAATTTATCATACCAACG CTTTCAAACCTAGCAAGCGCCTGGTTTCTTGGCCTCTTCATCTCCATCATTEST: gi|33409049|gb|CF214676.1|CF214676
genomic: GCTCCCTCCCTGCTATATGCCTTCTCACAGGGAAATTTATCATACCAACGgtaatttctt ... cttgattcagCTTTCAAACCTAGCAAGCGTCTGGTTTCTTGGCCTCTTCATCTCCATCATT
EST: GCTCCCTCCCTGCTATATGCCTTCTCACAGGGAAATTTATCATACCAACG CTTTCAAACCTAGCAAGCGTCTGGTTTCTTGGCCTCTTCATCTCTATCATTEST: gi|351044493|gb|FQ443024.1|FQ443024
genomic: GCTCCCTCCCTGCTATATGCCTTCTCACAGGGAAATTTATCATACCAACGgtaatttctt ... cttgattcagCTTTCAAACCTAGCAAGCGTCTGGTTTCTTGGCCTCTTCATCTCCATCATT
EST: GCTCCCTCCCTGCTATATGCCTTCTCACAGGGAAATTTATCATACCAACG CTTTCAAACCTAGCAAGCGTCTGGCTTCTTGGCCTCTTCATCTCCATCATTEST: gi|351034442|gb|FQ463255.1|FQ463255
genomic: GCTCCCTCCCTGCTATATGCCTTCTCACAGGGAAATTTATCATACCAACGgtaatttctt ... cttgattcagCTTTCAAACCTAGCAAGCGTCTGGTTTCTTGGCCTCTTCATCTCCATCATT
EST: GCTCCCTCCCTGCTATATGCCTTCTCGCAGGGAAATTTATCATACCAACG CTTTCAAACCTAGCAAGCGTCTGGTTTCTTGGCCTCTTCATCTCCATCATT
genomic: GCTCCCTCCCTGCTATATGCCTTCTCACAGGGAAATTTATCATACCAACGgtaatttctt ... cttgattcagCTTTCAAACCTAGCAAGCGTCTGGTTTCTTGGCCTCTTCATCTCCATCATT
tcattaattaaacttacgtaacctacttcttcctcttcttggaaacttgattcagCTTTCAAACCTAGCAAGCGTCTGGTTTCTTGGCCTCTTCATCTCCATCATTTTGACCAGTGTGCTTGAGCTTCGGTGGAGTGGTGTAAGCATAGAAGACT
aattaaactta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatttctttcactctgcatcttcaagccagctacgtccctccctcttaaagcttctagttttcttttctcttcactaaattacaccatacaaagaattcagattcagaattagcttaggacttgcttttgaagatcattaattaaacttacgtaacctacttcttcctcttcttggaaacttgattcagCTTTCAAACCTAGCAAGCGTCTGGTTTCTTGGCCTCTTCATCTCCATCATTTTGACCAGTGTGCTTGAGCTTCGGTGGAGTGGTGTAAGCATAGAAGACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG