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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatcaactttgccttatagagcagtacttaaagtcataattgttaatagcaggtgatgaggcagtgttaacatctctccgtatccttctctttgtgcagGGCATTGTCTATGTTGTTGATAGTGGGTTCTCAAAACAGCGATTTTATAATCCG

Basic information

species Vitis vinifera
transcript Vv10s0003g00810.t01
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18458301|gb|BM436579.1|BM436579
EST:     GGAAAGTGGTGATATCAACAAATATTGCAGAGACATCATTGACTTTGGAG                         GGCATTGTCTATGTTGTTGATAGTGGGTTCTCAAAACAGCGATTTTATAAT
genomic: GGAAAGTGGTGATATCAACAAATATTGCAGAGACATCATTGACTTTGGAGgtatcaactt ... ctttgtgcagGGCATTGTCTATGTTGTTGATAGTGGGTTCTCAAAACAGCGATTTTATAAT
EST: gi|30320990|gb|CD004252.1|CD004252
EST:     GGAAAGTGGTGATATCAACAAATATTGCAGAGACATCATTGACTTTGGAG                         GGCATTGTCTATGTTGTTGATAGTGGGTTCTCAAAACAGCGATTTTATAAT
genomic: GGAAAGTGGTGATATCAACAAATATTGCAGAGACATCATTGACTTTGGAGgtatcaactt ... ctttgtgcagGGCATTGTCTATGTTGTTGATAGTGGGTTCTCAAAACAGCGATTTTATAAT
EST: gi|33401544|gb|CF207171.1|CF207171
EST:     GGAAAGTGGTGATATCAACAAATATTGCAGAGACATCATTGACTTTGGAG                         GGCATTGTCTATGTTGTCGATAGTGGGTTCTCAAAACAACGATTTTATAAT
genomic: GGAAAGTGGTGATATCAACAAATATTGCAGAGACATCATTGACTTTGGAGgtatcaactt ... ctttgtgcagGGCATTGTCTATGTTGTTGATAGTGGGTTCTCAAAACAGCGATTTTATAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatagcaggtgatgaggcagtgttaacatctctccgtatccttctctttgtgcagGGCATTGTCTATGTTGTTGATAGTGGGTTCTCAAAACAGCGATTTTATAATCCG
                    tgttaac  putative branch site (score: 2)
                          catctctccgtatcct  CT-rich tract
                      ttaacat  TA-rich tract