Skip to another splice site:
1  
 5'  3'   
2  
 5'  3'   
3  
 5'  3'   
4  
 5'  3'   
5  
 5'  3'   
6  
 5'  3'   
7  
 5'  3'   
8  
 5'  3'   
9  
 5'  3'   
10  
 5'  3'   
11  
 5'  3'   
12  
 5'  3'   
13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcatctttcggctttcctgatgtattgctttatgtcttttagccaagaaggaaataaatcccttactaatttccctttgaaatacagTACAAATTTGGATTCAGATCATGCTTCCATGATACAACTGAGGATATCGTCATAAGGCTTGTCATGGGTGTGTTAGTACAACTCCTTTGTGGCTACGTGA

Basic information

species Vitis vinifera
transcript Vv10s0003g00410.t01
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71889441|gb|DT038496.1|DT038496
EST:     AACTCTTTTCAACTGGCGTTCTTTACATGGACTTGG                         TACAAATTTGGATTCAGATCATGCTTCCATGATACAACTGAGGATATCGTC
genomic: AACTCTTTTCAACTGGCGTTCTTTACATGGACTTGGgtaagcatct ... tgaaatacagTACAAATTTGGATTCAGATCATGCTTCCATGATACAACTGAGGATATCGTC
EST: gi|110717499|gb|EE093407.1|EE093407
EST:     AACTCTTTTCAACTGGCGTTCTTTACATGGACTTGG                         TACAAATTTGGATTCAGATCATGCTTCCATGATACAACTGAGGATATCGTC
genomic: AACTCTTTTCAACTGGCGTTCTTTACATGGACTTGGgtaagcatct ... tgaaatacagTACAAATTTGGATTCAGATCATGCTTCCATGATACAACTGAGGATATCGTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtcttttagccaagaaggaaataaatcccttactaatttccctttgaaatacagTACAAATTTGGATTCAGATCATGCTTCCATGATACAACTGAGGATATCGTCATAAGGCTTGTCATGGGTGTGTTAGTACAACTCCTTTGTGGCTACGTGA
                               tactaat  putative branch site (score: 1)
 tttcccttt  CT-rich tract
 ttactaattt  TA-rich tract