1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...ccatcaactagagtagtctgctttttctttcccatttctcttctccttttttcacattataattttgtagtatacacgttgttttcttgcttgatttcagGTATCCTTGATTGATATCATCATTGACGTTCTTTGTGAGTTATCCCGAAAGTTACACCTCACTGTTGGAAATTCAAAGGAACTGTTTGTTCATCTTCTAG
species | Vitis vinifera |
transcript | Vv09s0018g01400.t01 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: TGGCAGTCAACTATCTGTTGGAGAATGCTGGTGATTATGAGGACTGAATG GTATCCTTGATTGATATCATCATTGACGTTCTTTGTGAGTTATCCCGAAAG
genomic: TGGCAGTCAACTATCTGTTGGAGAATGCTGGTGATTATGAGGACTGAATGgtatgcttca ... ttgatttcagGTATCCTTGATTGATATCATCATTGACGTTCTTTGTGAGTTATCCCGAAAG
cttttttcacattataattttgtagtatacacgttgttttcttgcttgatttcagGTATCCTTGATTGATATCATCATTGACGTTCTTTGTGAGTTATCCCGAAAGTTACACCTCACTGTTGGAAATTCAAAGGAACTGTTTGTTCATCTTCTAG
gcttgat putative branch site (score: 5)
ttgttttcttgctt CT-rich tract
acattataattttgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccatcaactagagtagtctgctttttctttcccatttctcttctccttttttcacattataattttgtagtatacacgttgttttcttgcttgatttcagGTATCCTTGATTGATATCATCATTGACGTTCTTTGTGAGTTATCCCGAAAGTTACACCTCACTGTTGGAAATTCAAAGGAACTGTTTGTTCATCTTCTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
ccatcaa
- - - - - - - agtctgc
- - - - - - - - - - - - - ctttccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttcttgc