Sequence
atgc intronic sequence ATGC exonic sequencegttggtttgtcattcttgctttattaaatatttaattgtttaaatagcaggaaagttgcaattatttctaatatgttgggattgtagGTGTGGGATGCCACTAATGGAACTAAACAGTATACTTTTGAAGGCCATGAGGATGCAGTTTATTCTGTCTGCCCCCACTATAAGGAGAATATTCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0002g08370.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA08G22910.2 (Glycine max), 3'ss of exon 13
gttggtttgtcattcttgctttattaaatatttaattgtttaaat--agcaggaaagttgcaattatttctaat---atgttgggattgtagGTGTGGGATGCCACTAATGGAACTAAACAGTATACTTTTGAAGGCCATGAGGATGCAGTTTATTCTGTCTGCCCCCACTATAAGGAGAATATTCAG
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--------------gtaagttttcagaacatgagcttggtttgctgaagtggaggaactgaatatgttgctaactaaattatgcaatttaagGTATGGGATGCTGCTTCGGGTGCAAAGCAGTATACTTTTGAAGGTCATGAGGCTCCTGTTTATTCTGTCTGCCCACATTATAAAGAAAACATTCAG
upper sequence: Vv09s0002g08370.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA13G44420.2 (Glycine max), 3'ss of exon 13
gttggtttgtcattcttgctttattaaatatttaattgtttaaatagcaggaaagttgcaattatttctaatatgttgggattgtagGTGTGGGATGCCACTAATGGAACTAAACAGTATACTTTTGAAGGCCATGAGGATGCAGTTTATTCTGTCTGCCCCCACTATAAGGAGAATATTCAG
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gtaggtttgtcaaagcatgagcttggatttcttaagtgaagaactga-agataacatgtcactaactaagttatgc---aacttaagGTTTGGGATGCTGCTACGGGTGCGAAACAGTATACTTTCGAAGGTCATGAGGCTCCAGTTTATTCTATCTGTCCGCATTATAAAGAAAACATTCAG
upper sequence: Vv09s0002g08370.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA15G00880.1 (Glycine max), 3'ss of exon 12
gttggtttgtcattcttgctttattaaatatttaattgtttaaatagcaggaaagttgcaattatttctaatatgttgggattgtagGTGTGGGATGCCACTAATGGAACTAAACAGTATACTTTTGAAGGCCATGAGGATGCAGTTTATTCTGTCTGCCCCCACTATAAGGAGAATATTCAG
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---------gtaggtttgccaaagcatgagcttggatttcttaagtgaagataacatatgtcactaactaagttat-gcaacttaagGTTTGGGATGCTGCTACGGGTGCGAAACAGTATACTTTCGAAGGTCATGAAGCTCCAGTTTATTCTGTCTGTCCGCATTATAAAGAAAACATTCAG
upper sequence: Vv09s0002g08370.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA07G03180.1 (Glycine max), 3'ss of exon 13
gttggtttgtcattcttgctttattaaatatttaattgtttaaat--agcaggaaagttgcaattatttctaat---atgttgggattgtagGTGTGGGATGCCACTAATGGAACTAAACAGTATACTTTTGAAGGCCATGAGGATGCAGTTTATTCTGTCTGCCCCCACTATAAGGAGAATATTCAG----
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--------------gtaagttttcagaacatgagcttggtttgctgaagtggaggagctgaatatattgctaactaaattatgaaatttaagGTATGGGATGCTGCTTCGGGTGCAAAGCAGTATACTTTTGAAGGTCACGAGGCTCCTGTTTATTCTGTCTGCCCACNNNNNNNNNNNNNNNNNNNNNNNN atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.taattgtttaaatagcaggaaagttgcaattatttctaatatgttgggattgtagGTGTGGGATGCCACTAATGGAACTAAACAGTATACTTTTGAAGGCCATGAGGATGCAGTTTATTCTGTCTGCCCCCACTATAAGGAGAATATTCAG
ttctaat putative branch site (score: 2)
aattatttctaatatg TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttggtttgtcattcttgctttattaaatatttaattgtttaaatagcaggaaagttgcaattatttctaatatgttgggattgtagGTGTGGGATGCCACTAATGGAACTAAACAGTATACTTTTGAAGGCCATGAGGATGCAGTTTATTCTGTCTGCCCCCACTATAAGGAGAATATTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA