Sequence
atgc intronic sequence ATGC exonic sequencegtaagattctttttatcctgtcatttgtattagataaaaaactaggggtcttatgtgctgctttttatggatgccatatcttatttgtttagGTGACGGACTTTGGATCACTTGAGCTTTCTCCTGTTGATGGCCGCACGCTAACGGATTTTATGCATTTAAGAGGACTACAGATGCGCTCTTTGGGTCGTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0002g07530.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA08G22850.1 (Glycine max), 3'ss of exon 11
gtaagattctttttatcctgtcattt----gtattagataaaaaactaggggtcttatgtgctgctttttatggatgccatatcttatttgtttagGTGACGGACTTTGGATCACTTGAGCTTTCTCCTGTTGATGGCCGCACGCTAACGGATTTTATGCATTTAAGAGGACTACAGATGCGCTCTTTGGGTCGTG
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gtaacattacatttctcaaaggatttttgaatttctttcaataacccaaaagttttagacatga----ttaagaaccaaatgtatcacttttttagGCTATGGACTTTGGATCACTTGAACTTTCTCCAGTCGATGGTCGTACACTGACTGACTTTATGCATTTAAGAGGATTACAGATGCGATCTTTGGGTAAAG
upper sequence: Vv09s0002g07530.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA07G03250.1 (Glycine max), 3'ss of exon 13
gtaagattctttttatcctgtcattt-gtattagataaaaaactaggggtcttatgtgctgctttttatggatgccatatcttatttgtttagGTGACGGACTTTGGATCACTTGAGCTTTCTCCTGTTGATGGCCGCACGCTAACGGATTTTATGCATTTAAGAGGACTACAGATGCGCTCTTTGGGTCGTG
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gtaacattacatttctcaaaggattttgcatttctttgaataacccaaattttttttaca--tgattaagaaccaaatgtattacttttttagGCTATGGACTTTGGATCACTGGAACTTTCTCCAGTCGATGGTCGTACACTGACTGACTTTATGCATTTAAGAGGATTACAGATGCGATCTTTGGGTAAAG
upper sequence: Vv09s0002g07530.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: AT1G15290.1 (Arabidopsis thaliana), 3'ss of exon 10
gtaagattctttttatcctgtcatttgtattagataaaaaactaggggtcttatgtgctgctttttatggatgccatatcttatttgtttagGTGACGGACTTTGGATCACTTGAGCTTTCTCCTGTTGATGGCCGCACGCTAACGGATTTTATGCATTTAAGAGGACTACAGATGCGCTCTTTGGGTCGTG
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gtatgtctttagttagattacggatattaatttctgaaaatatatataacc-atacatatcaagtaatcattgtaatggtttatt-----agGTAGCAGATTTCGGGTCACTGGAGCTTTCTCCAGTTGATGGTCGCACTTTGACTGATTTCATGCATATAAGAGGACTCCAAATGCGTTCTCTAGGACATGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110370999|gb|EC934684.1|EC934684EST: TTATTGAGATGGCACACAAGTATTATGATGAAATCGCTTTACCAAAGCTG GTGACGGACTTTGGATCACTTGAGCTTTCTCCTGTTGATGGCCGCACGCTA
genomic: TTATTGAGATGGCACACAAGTATTATGATGAAATCGCTTTACCAAAGCTGgtaagattct ... atttgtttagGTGACGGACTTTGGATCACTTGAGCTTTCTCCTGTTGATGGCCGCACGCTA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aaaactaggggtcttatgtgctgctttttatggatgccatatcttatttgtttagGTGACGGACTTTGGATCACTTGAGCTTTCTCCTGTTGATGGCCGCACGCTAACGGATTTTATGCATTTAAGAGGACTACAGATGCGCTCTTTGGGTCGTG
tcttattt CT-rich tract
atatcttatttgttta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagattctttttatcctgtcatttgtattagataaaaaactaggggtcttatgtgctgctttttatggatgccatatcttatttgtttagGTGACGGACTTTGGATCACTTGAGCTTTCTCCTGTTGATGGCCGCACGCTAACGGATTTTATGCATTTAAGAGGACTACAGATGCGCTCTTTGGGTCGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG