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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatttttctccataaaccaagttctttgtcgaatattggtggatcattattgaactaacgcatactacctttactggtttgttttagAATGCATTCGAGCTGGCCTTCTTTATCTGGGTTTCA

Basic information

species Vitis vinifera
transcript Vv08s0040g02180.t01
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0040g02180.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA03G33660.1 (Glycine max), 3'ss of exon 12
gtaatttttctccataaaccaagttc--tttgtcgaatattggtggatc---attat------tgaactaacgcat-actacctttactggtttgtttt----agAATGCATTCGAGCTGGCCTTCTTTATCTGGGTTTCA
||||   || |   || |  || |       |   ||| || |||  |    |||||      |||  |||   || |||   |  |||  |||| |      |||||||||||||||| ||||||||||| ||||| |||
gtaaaccttttatgtacatgaaatatgacaagaataatgtttgtgatttccaattatccatgatgacataattaatcacttattaaactaatttgatcctgacagAATGCATTCGAGCTTGCCTTCTTTATATGGGTATCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atattggtggatcattattgaactaacgcatactacctttactggtttgttttagAATGCATTCGAGCTGGCCTTCTTTATCTGGGTTTCA
                    aactaac  putative branch site (score: 1)
                                             tttgtttt  putative PPT
          atcattatt  TA-rich tract