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...gtataatattgaaccatagggtgtatgaatccttatatttaccatttttagcatattattttggataggtgagctgatttccttgttctccacattgcagCCTGACTCTTTAGGACCCTTAGATTTGGATATACCTTCCTCTAGATACCATAACGAAGATCTAATCTTAAGCGAAAGCCTCAGTGGTTTGAAAAGCTTGA
species | Vitis vinifera |
transcript | Vv08s0040g01460.t01 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: TGCTGGATAGTACTGCCAAGGATCTCAGTGGGCTTGCAGATATATACTGG CCTGACTCTTTAGGACCCTTAGATTTGGATATACCTTCCTCTAGATACCATEST: gi|29785360|gb|CB342279.2|CB342279
genomic: TGCTGGATAGTACTGCCAAGGATCTCAGTGGGCTTGCAGATATATACTGGgtacctattt ... cacattgcagCCTGACTCTTTAGGACCCTTAGATTTGGATATACCTTCCTCTAGATACCAT
EST: TGCTGGATAGTACTGCCAAGGATCTCAGTGGGCTTGCAGATATATACTGG CCTGACTCTTTAGGACCCTTAGATTTGGATATACCTTCCTCTAGATACCATEST: gi|110418578|gb|EC984738.1|EC984738
genomic: TGCTGGATAGTACTGCCAAGGATCTCAGTGGGCTTGCAGATATATACTGGgtacctattt ... cacattgcagCCTGACTCTTTAGGACCCTTAGATTTGGATATACCTTCCTCTAGATACCAT
EST: TGCTGGATAGTACTGCCAAGGATCTCAGTGGGCTTGCAGATATATACTGG CCTGACTCTTTAGGACCCTTAGATTTGGATATACCTTCCTCTAGATACCAT
genomic: TGCTGGATAGTACTGCCAAGGATCTCAGTGGGCTTGCAGATATATACTGGgtacctattt ... cacattgcagCCTGACTCTTTAGGACCCTTAGATTTGGATATACCTTCCTCTAGATACCAT
ttttagcatattattttggataggtgagctgatttccttgttctccacattgcagCCTGACTCTTTAGGACCCTTAGATTTGGATATACCTTCCTCTAGATACCATAACGAAGATCTAATCTTAAGCGAAAGCCTCAGTGGTTTGAAAAGCTTGA
agctgat putative branch site (score: 4)
tttccttgttctccac CT-rich tract
atattattttggata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtataatattgaaccatagggtgtatgaatccttatatttaccatttttagcatattattttggataggtgagctgatttccttgttctccacattgcagCCTGACTCTTTAGGACCCTTAGATTTGGATATACCTTCCTCTAGATACCATAACGAAGATCTAATCTTAAGCGAAAGCCTCAGTGGTTTGAAAAGCTTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - -aaccata
- - - - - - - - - - gtgtatg
- - - - - - - - - - - - - - - - - - - - -ccatttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggatag